Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56980 69 / 2e-13 unknown protein AT2G26110 62 / 3e-11 Protein of unknown function (DUF761) (.1) AT4G26130 59 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014282 [exp] 210 / 3e-68 AT5G56980 84 / 1e-18 unknown protein Lus10019517 [exp] 62 / 3e-11 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1) Lus10026978 [exp] 60 / 1e-10 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10024988 [exp] 59 / 4e-10 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152200 [exp] 65 / 3e-12 AT5G56980 103 / 2e-25 unknown protein Potri.006G228800 [exp] 65 / 5e-12 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1) Potri.018G053000 [exp] 59 / 5e-10 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025985 pacid=23173140 polypeptide=Lus10025985 locus=Lus10025985.g ID=Lus10025985.BGIv1.0 annot-version=v1.0 ATGTGGACCTCCGTCGCCGAATTGGTGACCCCGTCGTCTCTTTTCCTCCTCCTCAACCTCACCATCGCCGCCATCGCTCTCACTTCCCGGAGGAACAACC AATCCCTCGAATCATCATCACAACATCAGATTGGCCTCGACCGTGCTCCTACACTTCTTGAAAGAGTCCGCTCCGTCAATCTCTACTCCATCTACAGCTT CTCATCCGAAATCGAAGCCACTCTCCCAGCCACTCCTAGGGCGGCGGCACTACAGAGGACCTCCTCCTCTTCCTCCTCCTCCGCCTCTCTCATCTTCAAA TCGCTCCCCAATTCCAGAAATGAACCGGATCGTATTGACCCGATCCGTCCTCGGGATGAGCGGGTGGTGGTCAAGCGGATTAAGTCAGAGACGGCGATGG CTGGGGAAGGGGAATTAGTTAGGAAGAAGAAGATGAGGAAATCGGCGAGCGAGAAATGCGTAGGGGAGGTGTTGTTGACGACGACGACGGTGGTGGGCAA GGAGGAGGAAGGAATAAGGGAACGGTTGGAGAATCGCCGTCCGGCGACTGTGAGGCTACAGAAGGCGGTGTCGATTGGAGACGATCACGGAGGAGTTGAC TCCAAGGCTGACGATTTCATCAACAGGTTCAAGCAGCAGCTCAAGTTGCAGAGGGTCGACTCTCTGCTGCGGAGGAAACAACTCCTCAAAGCCCGCGCCT TGCAACATACGTAA
AA sequence Show only first row Show all	>Lus10025985 pacid=23173140 polypeptide=Lus10025985 locus=Lus10025985.g ID=Lus10025985.BGIv1.0 annot-version=v1.0 MWTSVAELVTPSSLFLLLNLTIAAIALTSRRNNQSLESSSQHQIGLDRAPTLLERVRSVNLYSIYSFSSEIEATLPATPRAAALQRTSSSSSSSASLIFK SLPNSRNEPDRIDPIRPRDERVVVKRIKSETAMAGEGELVRKKKMRKSASEKCVGEVLLTTTTVVGKEEEGIRERLENRRPATVRLQKAVSIGDDHGGVD SKADDFINRFKQQLKLQRVDSLLRRKQLLKARALQHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56980			unknown protein		Lus10025985 [exp]	0	1
AT5G40020			Pathogenesis-related thaumatin...		Lus10008304 [exp]	1.4	0.9636
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10038556 [exp]	2.0	0.9553
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030892 [exp]	2.8	0.9403
AT1G05060			unknown protein		Lus10030021 [exp]	5.5	0.9584
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	7.5	0.9166
AT1G58070			unknown protein		Lus10015482 [exp]	11.5	0.9564
					Lus10004651 [exp]	13.0	0.9492
AT2G36210			SAUR-like auxin-responsive pro...		Lus10021341 [exp]	15.5	0.9296
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	18.2	0.9373
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	21.7	0.8816

Compare expression of checked genes

Lus10025985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.