Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18170 617 / 0 ATMPK7 MAP kinase 7 (.1) AT1G10210 581 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT4G36450 575 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G59580 564 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G07880 411 / 1e-143 ATMPK13 Protein kinase superfamily protein (.1.2) AT4G01370 406 / 3e-141 ATMPK4 MAP kinase 4 (.1) AT4G11330 399 / 1e-138 ATMPK5 MAP kinase 5 (.1) AT2G43790 391 / 5e-135 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 390 / 5e-135 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT1G01560 387 / 4e-134 ATMPK11 MAP kinase 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014283 [exp] 722 / 0 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10033197 [exp] 583 / 0 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10010637 [exp] 581 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10028765 [exp] 416 / 3e-145 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 416 / 3e-145 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 414 / 5e-144 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 404 / 2e-140 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10027091 [exp] 404 / 1e-139 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 403 / 1e-139 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119500 [exp] 626 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.007G020100 [exp] 623 / 0 AT2G18170 654 / 0.0 MAP kinase 7 (.1) Potri.005G231100 [exp] 601 / 0 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 592 / 0 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.003G131800 [exp] 410 / 1e-142 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 409 / 3e-142 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 409 / 5e-142 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 405 / 5e-141 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.002G162500 [exp] 404 / 2e-140 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 403 / 7e-140 AT4G01370 657 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025986 pacid=23173090 polypeptide=Lus10025986 locus=Lus10025986.g ID=Lus10025986.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTCTGGTGGAGCCACCAAACGGGGTGAAACAGAGAGGGAAGCATTACTACTCAATGTGGCAGAATGTCTTCGAGATTGACACCAAATACG TGCCGATTAAGCCCATAGGAAGAGGGGCTTACGGCATTGTTTGCTCTTCCATCAATAGGGAGACCAACGAGAAAGTTGCAATCAAGAAGATCAACAATGT CTTTGAAAGCAAGACTGATGCTCTTAGGACTCTTAGAGAGTTGATACTGCTTAGGCATATGAGGCATCCGAATGTCATTGCTTTGAAGGATGTCATGTTT CCTACCACCAATCGTCTCACCTTCAAAGATGTTTATTTGGTCTACGAGCTTATGGATACTGATCTGCATCAGATTATCAAGTCCTCTCAACCCCTTTCCA ATGATCACATCCGATACTTCATTTTTCAGCTGCTGCGAGGACTGAACTACCTACACTCAGCCAACATTCTCCATCGTGATCTGAAGCCAGGAAACCTTCT CGTGAATGCAAACTGCGAGCTTAAGATTTGCGACTTCGGATTAGCAAGAACAACAAGCCAAGGCAACGAGGAGTTCATGACCGAGTACGTCGTCACCAGA TGGTACCGTGCACCTGAGCTCCTCCTATCCAGTGACAACTACGGAACTTCAATTGACATCTGGTCCGTCGGATGCATCTTCGCCGAAATCCTGGGACGAA AACCCATCTTCCCCGGGACGGAATGCCTCAATCAGCTCAAGCTGATCATCAACGTGCTAGGAAGCCAGCAGGATGCTGATCTTCAATTCATTGACAGCCC CAAATCCAGAAGGTACATTAAGATGCTAGCTCACTCGAGAGGAGTCAGTTTCTCGCAATTGTACCCTCGAGCAGACCCTCTAGCCATAGACTTGCTTCAA AGGATGCTCGTGTTTGATCCAACGAAACGGATCACAGTCACCGAGGCGCTTATGCATCCTTACGTGTCGAAGCTCTATGATGAGCAGAGAAGCATGCCTG CTGCTCGAGTTCCTGTCAAGCTTGATATAGATGAGAGTCTTGGGGAGAATATGATTAGGGAGATGATGTGGGATGAGATGCTCCTTTACCACCCTCAAAT TGGTGTTTGA
AA sequence Show only first row Show all	>Lus10025986 pacid=23173090 polypeptide=Lus10025986 locus=Lus10025986.g ID=Lus10025986.BGIv1.0 annot-version=v1.0 MAATLVEPPNGVKQRGKHYYSMWQNVFEIDTKYVPIKPIGRGAYGIVCSSINRETNEKVAIKKINNVFESKTDALRTLRELILLRHMRHPNVIALKDVMF PTTNRLTFKDVYLVYELMDTDLHQIIKSSQPLSNDHIRYFIFQLLRGLNYLHSANILHRDLKPGNLLVNANCELKICDFGLARTTSQGNEEFMTEYVVTR WYRAPELLLSSDNYGTSIDIWSVGCIFAEILGRKPIFPGTECLNQLKLIINVLGSQQDADLQFIDSPKSRRYIKMLAHSRGVSFSQLYPRADPLAIDLLQ RMLVFDPTKRITVTEALMHPYVSKLYDEQRSMPAARVPVKLDIDESLGENMIREMMWDEMLLYHPQIGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	0	1
AT1G72460			Leucine-rich repeat protein ki...		Lus10008128 [exp]	9.2	0.8374
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10031437 [exp]	10.5	0.7387
AT4G21865			unknown protein		Lus10023724 [exp]	12.6	0.8165
					Lus10032997 [exp]	22.6	0.7058
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029469 [exp]	24.1	0.8066
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	25.7	0.7886
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	26.9	0.7723
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	29.0	0.8036
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	33.4	0.7727
					Lus10038430 [exp]	34.3	0.7803

Compare expression of checked genes

Lus10025986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.