Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27660 116 / 6e-29 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 92 / 5e-21 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G19500 91 / 8e-21 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 91 / 2e-20 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 90 / 1e-19 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 84 / 3e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 87 / 1e-18 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 82 / 7e-18 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 79 / 2e-17 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21340 76 / 3e-15 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014279 [exp] 277 / 7e-87 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010638 [exp] 114 / 5e-28 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 96 / 1e-21 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 94 / 1e-21 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 94 / 1e-21 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 90 / 4e-20 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027064 [exp] 86 / 4e-20 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025599 [exp] 86 / 4e-20 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 90 / 7e-20 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020200 [exp] 136 / 2e-36 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G119601 [exp] 126 / 8e-33 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 122 / 5e-31 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 120 / 3e-30 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 96 / 6e-22 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 91 / 8e-22 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.019G112000 [exp] 90 / 1e-21 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G051600 [exp] 93 / 3e-21 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 91 / 2e-20 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 92 / 3e-20 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025987 pacid=23173154 polypeptide=Lus10025987 locus=Lus10025987.g ID=Lus10025987.BGIv1.0 annot-version=v1.0 ATGGAGCCTCCAAACTTCCATCATCCCCAAGATCAGTTCTCTGGCTACTTCTCTTCTTTGCTCTCCCTTCCTCCACCACCACCACCACAACCAACCTCCA TCAACTCACAAGACCACCACCACCACCACCACCTCATGTTGAGTACTAGCAATAGTAGTAATAGTAGCTACCAGAACTATCATCATCAGCTGATTGATCA ATCATCAAAGGATCATGACTATTCGTGGCCAGCACAGCCACCACCACCATCACTTAGATCTTTGATGAATCTTGAAAGCTTCGACGCGAACGAGTTGCTG CTCTCAAAGATCAAAGATGAGATGCCTGACGCTTTCCCGAAGCTTAGGGATATGAACATCTACAACAACAACAACAGCAACAACAACTATTTCTCTTCTA CGAATTCGGGGTTCTCGTCAGAAGCAGATCCTTATCATCATCAGTTGTACCCTAAAAGCCATCATCATCATGTTATGCCAAGTATAAATGTGTTGAACTC GAATCTGTGTTCTTCTTTGGTCTCATCATCAAGCTCCCTTGATTTGAACTTAAGAGCTGTGGATCATCATTTGAACCATGCATCAACTCCTACTCCCAGC CATAGTACTAGTACTACTTCAAGAAACAGCAACATGCAGATGATGAGTCAGCATCATTTCATGGGAGATAGTCCCTCCCATAGCTCGAATAATAAAACCA TTGGAATTGAAGCAACAGTATCACTGGGGATCAAAAAGAGCAAGAGGCCTATCAGTAGCTTTTCTGATCAGTCCTCGTCGTCAAAGAACAATACTCAAGC AGATGATCATAAGAAGAAACGGTCCACGTCAAGACCCTCTTGCCCACCGTTAAAGGTGAGGAAGGAGAAACTTGGAGACAGAATTGCTTCTCTTCAGAGA CTGGTTGCACCTTATGGAAAGACAGACACAGCCTCAGTATTGACAGAAGCCATTGGCTACATACAGTTCCTCCACGACCAAGTTCAGACATTGAGTGTGC CGTACATGAGGTCAACATCAAACAACCAGCCAACTAGGCCATTCATGCTCAGGGTAAGATACTAA
AA sequence Show only first row Show all	>Lus10025987 pacid=23173154 polypeptide=Lus10025987 locus=Lus10025987.g ID=Lus10025987.BGIv1.0 annot-version=v1.0 MEPPNFHHPQDQFSGYFSSLLSLPPPPPPQPTSINSQDHHHHHHLMLSTSNSSNSSYQNYHHQLIDQSSKDHDYSWPAQPPPPSLRSLMNLESFDANELL LSKIKDEMPDAFPKLRDMNIYNNNNSNNNYFSSTNSGFSSEADPYHHQLYPKSHHHHVMPSINVLNSNLCSSLVSSSSSLDLNLRAVDHHLNHASTPTPS HSTSTTSRNSNMQMMSQHHFMGDSPSHSSNNKTIGIEATVSLGIKKSKRPISSFSDQSSSSKNNTQADDHKKKRSTSRPSCPPLKVRKEKLGDRIASLQR LVAPYGKTDTASVLTEAIGYIQFLHDQVQTLSVPYMRSTSNNQPTRPFMLRVRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	0	1
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	1.7	0.9464
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	2.2	0.9605
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	3.0	0.9383
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	4.7	0.9488
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	5.9	0.9405
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	7.4	0.9371
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	7.7	0.9395
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	7.7	0.9369
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	8.5	0.9460
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	9.3	0.8909

Compare expression of checked genes

Lus10025987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.