Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19630 169 / 4e-48 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT2G32440 90 / 1e-19 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G05160 86 / 3e-18 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT5G36140 79 / 3e-16 CYP716A2 "cytochrome P450, family 716, subfamily A, polypeptide 2", cytochrome P450, family 716, subfamily A, polypeptide 2 (.1) AT4G36380 75 / 2e-14 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 72 / 1e-13 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G36110 69 / 8e-13 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT5G45340 69 / 1e-12 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 66 / 1e-11 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G38970 66 / 1e-11 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014285 [exp] 560 / 0 AT1G19630 249 / 2e-78 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10024272 [exp] 159 / 1e-44 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10028594 [exp] 119 / 5e-30 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10018898 [exp] 118 / 2e-29 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10014240 [exp] 81 / 2e-16 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10000647 [exp] 78 / 2e-15 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10040055 [exp] 74 / 3e-14 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10024495 [exp] 74 / 3e-14 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042652 [exp] 74 / 3e-14 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033000 [exp] 178 / 1e-51 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.002G069600 [exp] 112 / 2e-27 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.014G179100 [exp] 85 / 6e-18 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 80 / 3e-16 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.011G137800 [exp] 77 / 1e-15 AT5G36110 157 / 1e-44 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.014G029100 [exp] 76 / 6e-15 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.008G067500 [exp] 74 / 3e-14 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.012G115000 [exp] 74 / 3e-14 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G018400 [exp] 73 / 5e-14 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.012G071200 [exp] 73 / 5e-14 AT1G05160 181 / 3e-52 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025990 pacid=23173116 polypeptide=Lus10025990 locus=Lus10025990.g ID=Lus10025990.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTAACGAAGAACAATGAACTACTGATGATCATGTCGGTTTTGAAGAACAATACTGACCTTATAGTTGCAGGTTTCCTGTCAATAGCTGCAA CTTTTCTGCTGTCCAGAATCTGGAGCATACTAGCTGCTGCAGGGGGGAAAGTCCAGAATATCCCTGGCCGCCTTGGTTTCCCGATTATCGGGGAAACCTT TGCTTTCCTGTCGGCCACCAACAGCTTCAAGGGATGTTACGAGTTCGTCAGCATGAGAAGATCATGGTACGGGAAGTGGTTCAAGACGAGGCTGTTCGGG AAAATCCACGTGTTTGTTCCGACATCGGAGGGAGCTAGGAAGATATTCACCAACGATTTCACCTACTTCAACAAAGGCTACGTGAAATCAATGGCTGATT GTGTCGGGAGCAAGAGCTTGCTCTCTGTCCCTCACGACAGCCATAAGAGGATTAGGGGCTTGTTCCAGCCGACATCTGAGGGAGCTAGGAAGATATTCAC CAACGATTTCACCTACTTCAACAAAGGCTATGTGAAATCAATGGCTGATTGTGTCGGGAGCAAGAGCTTGCTCTCTGTCCCTCACGACAGCCATAAGAGG ATTAGGCGTTTGCTCCAGGAACCTTTCTCTATGCCTTCCCTTTCCACTTTCGTCAGCAAGTTTGACAGAATGCTCTCCCGCAAGCTCGAAACAGTCCAGC GGATCGGGGAGAGCTTCACTGTTCTTGACTTCAGCATGAAGATGACATTCGATGCTATGTGTAACATGCTGATGAGCATTGAAGAGGATTCGTTACTGCG GGAGATCGAGAAGGATTGCATTGCTGTTTCGGAAGCTATGCTGTCGTTTCCTGTGATGATTCCAGGGACCAGATACTATAAAGGAATCAAGGCAAGGGAA AGGCTGATGGAAAGATTTGGGGGTATGATTGCCAGGAGAAGAAGTGGATTGGAGTGTCATGAAGATTTCTTGCAGTCCATGCTGGCAAAGGATTCGTTCC CGCCAAGCGAAAAGCTGGAGGATTCGGAGATCATGGATATCTCCTGA
AA sequence Show only first row Show all	>Lus10025990 pacid=23173116 polypeptide=Lus10025990 locus=Lus10025990.g ID=Lus10025990.BGIv1.0 annot-version=v1.0 MAELTKNNELLMIMSVLKNNTDLIVAGFLSIAATFLLSRIWSILAAAGGKVQNIPGRLGFPIIGETFAFLSATNSFKGCYEFVSMRRSWYGKWFKTRLFG KIHVFVPTSEGARKIFTNDFTYFNKGYVKSMADCVGSKSLLSVPHDSHKRIRGLFQPTSEGARKIFTNDFTYFNKGYVKSMADCVGSKSLLSVPHDSHKR IRRLLQEPFSMPSLSTFVSKFDRMLSRKLETVQRIGESFTVLDFSMKMTFDAMCNMLMSIEEDSLLREIEKDCIAVSEAMLSFPVMIPGTRYYKGIKARE RLMERFGGMIARRRSGLECHEDFLQSMLAKDSFPPSEKLEDSEIMDIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	0	1
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	1.0	0.9835
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	4.5	0.9502
					Lus10008233 [exp]	6.6	0.9403
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	6.7	0.9473
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	7.2	0.9471
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	7.7	0.9409
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	7.9	0.9344
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	9.5	0.9445
					Lus10042813 [exp]	10.5	0.9331
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	10.6	0.9381

Compare expression of checked genes

Lus10025990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.