Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66420 981 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014286 [exp] 1332 / 0 AT5G66420 1011 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021000 [exp] 1068 / 0 AT5G66420 966 / 0.0 unknown protein Potri.005G120100 [exp] 514 / 5e-177 AT5G66420 555 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06792 [flax] [poplar] UPF0261 Uncharacterised protein family (UPF0261) CL0151 [flax] [poplar] PK_TIM PF09370 [flax] [poplar] PEP_hydrolase Phosphoenolpyruvate hydrolase-like
Representative CDS sequence Show only first row Show all	>Lus10025992 pacid=23173129 polypeptide=Lus10025992 locus=Lus10025992.g ID=Lus10025992.BGIv1.0 annot-version=v1.0 ATGGCAGATACTGATCCAAGTCCCCGAGTTTTCTGCGTCGGAACCGCCGACACAAAGCTCGAAGAGCTCCGCTTTCTCTCAGATTCCGTAGTTTCCTTCT TCAACAACTCTTCTTCCTCTTATACGGTCGAGGTTGTGATGGTGGATGTTTCCGTTGGTCGGAAGGAGGCAGAAATCCCTACAGGAGATTTCAAAATCGT GACGAGAAATGAGGTGCTGCTTGCTTCATCCAAGCAGCAACAGCTTCCGGACGACAGAGCCGAAGCTGTTGCGGTGATGGGTAGGGCGCTGAAGTGCTTC CTGGAAAAGGCGCAAGAGAGTTGTATCATAGCCGGAGCTATCGGAATCGGAGGTAGTGGAGGCACTTCTCTTATATCCTCTGCATTCAGATCGCTTCCGA TTGGAATGCAGAAGATGATTGTGTCCACTGTGGCAAGTGGTCAAACTGGACCGTATGTTGGAACTTCTGATCTTGTGTTGTTTCCTTCCGTTGTGGATGT GTGCGGCATTAACAGTGTAAGTAGGGTCATCTTGTCGAATGCCGGAGCTGCTTTTGCCGGGATGGTTACTGGAAGGCTGTGTAAGGCTGGTAGCTCTTCC GGTGGTGAGAGTGCGAAACCTACTGTTGGGATGACCATGTTTGGGGTCACAACTCCGTGTGTGAATGCTGTTAAGGAGAGGCTTGAAAAGGAAGGTTATG AGACGTTGGTCTTCCATGCCACTGGTGTTGGAGGGATGGCAATGGAGTCTCTTGTGCGAGAGGGGTTTATACAGGGGGTCTTGGACATTACTACTACCGA GGTCGCAGATTACATAGTTGGGGGTGTTATGGCTTGTGATAGTTCCCGTTTTGATGCCATCGTTGAGAAGAAAATTCCTTTGGTCCTGAGTGTCGGAGCC TTGGATATGGTTAATTTTGGAGCCAAGGACACTATACCTTCTCAATTCCAGCAACGAAATATTCATGTTCACAACGAGCAGGTTTCATTAATACGAACAA CGGCAGATGAAAATAAGAAATTTGCAGCCTTCATAGCTGATAAACTCAATAATTCGTCGGCCAAGATCTGTGTTTGCCTGCCAGAAAAGGGTGTCTCTGC TTTGGATGCCCAAGGGAGGCCATTTTATGATCCAGATGCGACTTCCACTTTACTGAACGAACTCAAACGTCTGATTCAGAAGACAGAAGATAGGCAGGTG AAAGTGTTCCCTTACAATATCAATGACCCTGAGTTTGCCAATGCTCTTGTCGACTCATTTCTGGAGATAACTTTGGAACATCCTATGAAACCAAATCCTC CAGAAGCTCCTATATGCGAAGCCTCTCAAGATCAAAGTAAAATGAGTGTAGAATCCTCAAGATCTGCAACCGTTCCATACAGCCCAAGTAACTATCCTGA TGCTAGACCAGATACCTTGCAAAAAACCAGCGCAATATTGCAGGAGCTGAGAGGTCAAATAGATCAAGGATTCCCAATTATTGGGGCTGGTGCAGGAACG GGGATATCAGCAAAGTTTGAGGAAGCTGGTGGTGTTGATCTTATAGTCTTGTATAACTCGGGACGCTTTCGCATGGCAGGCAGAGGTTCTTTGGCAGGCT TGTTGCCATTTGCTGATGCAAATGCCATTGTAATGGAAATGGCTAATGAAGTTTTACCAGTAATAGAGAACGTTCCCGTGCTTGCTGGAGTATGTGGAAC CGATCCTTTCCGCCGTATGGATTACTTCCTGAAGCAGCTGGAATCAATTGGATTCTGCGGGGTGCAGAACTTTCCAACTGTTGGACTGTTTGATGGCAAC TTCAGACAAAATCTAGAAGAGACTGGAATGGGATATGGCTTGGAGGTCAAAATGATTGCGAAGGCTCATACACTTGGTCTCTTGACAACACCATACGCTT TTAACCCAAATGAAGCTACTGAAATGGCAAAGGCCGGTGCTGATATAATTGTCGCACACATGGGGCTAACCACGTCTGGGTCAATAGGTGCGAAAACTGC AATCTCACTTGAGGAAAGTGTCAATTGTGTCCAAGCAATTGCAGATGCCGCTCACAAGATCAACCCTGCCATCATCGTACTGTGCCATGGAGGTCCGATA TCGGCACCCAAAGAAGCAGAGTTCGTGCTGAAGAGAACTAATGGAGTGCATGGATTCTATGGTGCATCAAGCATGGAGAGACTCCCTGTTGAACAAGCTA TAACGAGCACAATGCGACAGTACAAATCGATTTCCATAAAAAAGTAA
AA sequence Show only first row Show all	>Lus10025992 pacid=23173129 polypeptide=Lus10025992 locus=Lus10025992.g ID=Lus10025992.BGIv1.0 annot-version=v1.0 MADTDPSPRVFCVGTADTKLEELRFLSDSVVSFFNNSSSSYTVEVVMVDVSVGRKEAEIPTGDFKIVTRNEVLLASSKQQQLPDDRAEAVAVMGRALKCF LEKAQESCIIAGAIGIGGSGGTSLISSAFRSLPIGMQKMIVSTVASGQTGPYVGTSDLVLFPSVVDVCGINSVSRVILSNAGAAFAGMVTGRLCKAGSSS GGESAKPTVGMTMFGVTTPCVNAVKERLEKEGYETLVFHATGVGGMAMESLVREGFIQGVLDITTTEVADYIVGGVMACDSSRFDAIVEKKIPLVLSVGA LDMVNFGAKDTIPSQFQQRNIHVHNEQVSLIRTTADENKKFAAFIADKLNNSSAKICVCLPEKGVSALDAQGRPFYDPDATSTLLNELKRLIQKTEDRQV KVFPYNINDPEFANALVDSFLEITLEHPMKPNPPEAPICEASQDQSKMSVESSRSATVPYSPSNYPDARPDTLQKTSAILQELRGQIDQGFPIIGAGAGT GISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIVMEMANEVLPVIENVPVLAGVCGTDPFRRMDYFLKQLESIGFCGVQNFPTVGLFDGN FRQNLEETGMGYGLEVKMIAKAHTLGLLTTPYAFNPNEATEMAKAGADIIVAHMGLTTSGSIGAKTAISLEESVNCVQAIADAAHKINPAIIVLCHGGPI SAPKEAEFVLKRTNGVHGFYGASSMERLPVEQAITSTMRQYKSISIKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66420			unknown protein		Lus10025992 [exp]	0	1
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	1.4	0.8932
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	6.5	0.8794
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	12.7	0.8702
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	15.4	0.8642
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	17.7	0.8394
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	17.7	0.8610
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	19.4	0.8639
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	20.8	0.8402
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	21.4	0.8556
AT1G31780			unknown protein		Lus10037280 [exp]	21.9	0.8364

Compare expression of checked genes

Lus10025992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.