Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19640 288 / 9e-94 JMT jasmonic acid carboxyl methyltransferase (.1) AT4G36470 284 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 283 / 3e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 281 / 3e-91 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 272 / 3e-87 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G04380 265 / 9e-85 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 261 / 3e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 253 / 2e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 243 / 2e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 192 / 7e-57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041380 [exp] 402 / 1e-138 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 402 / 8e-135 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 389 / 9e-133 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 377 / 1e-128 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 372 / 9e-127 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 269 / 3e-86 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 242 / 4e-76 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 191 / 4e-56 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 157 / 3e-44 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 473 / 2e-166 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 347 / 4e-117 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 342 / 7e-115 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 322 / 3e-107 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021400 [exp] 299 / 4e-98 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 289 / 2e-94 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 288 / 4e-94 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 277 / 1e-89 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022200 [exp] 221 / 2e-68 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G041900 [exp] 216 / 2e-65 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025993 pacid=23173217 polypeptide=Lus10025993 locus=Lus10025993.g ID=Lus10025993.BGIv1.0 annot-version=v1.0 ATGGAGGTGGTCGATGTGCTTCACATGAATGGCGGTATGGGGCAAAACAGCTATGCCATGAACTCTTTGCTTCAGCAAAAGGTTATATCGATGACTAAGC CGATAGCAGAGGAGGCAATCACGCAACTCTACGTCTCCACCTTCCCGACGGCGAGGATAGCAATCGCGGATTTGGGTTGCTCGTCAGGGCCCAACGCTCT TTTCACCGTCACACTGCTGATCAAAACAGTGGAGGCTCTTTCCAAGAAGTTGTCTCGTAAGTCACCTGAGTTCCAGGTGTTCCTCAACGACCTCCCTGGA AATGACTTCAACAACATCTTCAGGTCAATCAACAGGAAATCAAACTGCGGCTCGCCGTTCATCAACGGGGTTCCGGGGACATTCTACGGCAGGCTTTTCC CACTCAACAGCATTCACTTTGTTCATTCTTCCTACAGCCTCCAGTGGTTGTCTCAGGTTCCGAAAGGGGTCCAGGAGGAGAACATCGGCAACATTTATAT GGCTAGTAGCAGCCCTCCGAGCGTGCTGGATGCTTATTACGGCCAGTTCCGGAGCGATTTCTCGCTATTTCTCCGATGCCGAGCTCAGGAGGTGGTGACC GGTGGAAGGATGGTTTTGACGTTCCTCGGGAGAAGAAGCGATGACCCTTCCAGTAAGGAGTGTTGCTTTATTTGGGAGCTCATGTCCATCGCCCTCAACC AAATGGCCTCCGAGGGCTTGATCGACCACGACAAGCTGGACAAGTTCAACATCCCGCAGTACACGCCGTCGCCGGCGGAAGTGGAGGCTGAAGTGAAGAA GGAGGGATCCTTCGTCATCGACCGCCTTGCCGTTTCGAAAGTGAGGTGGGATGCTTACGACGACGGCAACGAAGATGGTGCCCGGAAGGACGGTGGGTAC ACGGTGGCAGCTTGCATGAGGGCGGTGGCGGAGCCGCTGCTCGTCAGCCAGTTTGGTGGGGGGGAAATCATCGACGAAGTTTTCAGGAGGTACAGAGTCA TTGTCTCTGAGCGGATGGCCAATGAGAAGACTGAATTTGTTAACGGAGATTATGGTAATTTCAATTTTCAATGTCCAATGAAGAACGCAATGATCACAAA GTTAAAAAGCCGATCTCAGTGGCTGCAGCAGCAATTGGCGAATGCATCGACCAGAGGATCCGAGAGGTGGACTGGTCCTTGTCAAGCAATTCCATTGCAG AAAGAAGAGCTGCAGCAATTTAATCTTCATGTTCTATCACTCCAGCAGAGCTTCCTGTGCAATCTTGGACTCCAAACAAATCCCTCTTGGAAGGCTCAAT GTGCTTGGGTTGTGTACCGACACAGTTCAGCTGCACCAGTCTTTTCTCCAGCGGTTGAGTCTTGA
AA sequence Show only first row Show all	>Lus10025993 pacid=23173217 polypeptide=Lus10025993 locus=Lus10025993.g ID=Lus10025993.BGIv1.0 annot-version=v1.0 MEVVDVLHMNGGMGQNSYAMNSLLQQKVISMTKPIAEEAITQLYVSTFPTARIAIADLGCSSGPNALFTVTLLIKTVEALSKKLSRKSPEFQVFLNDLPG NDFNNIFRSINRKSNCGSPFINGVPGTFYGRLFPLNSIHFVHSSYSLQWLSQVPKGVQEENIGNIYMASSSPPSVLDAYYGQFRSDFSLFLRCRAQEVVT GGRMVLTFLGRRSDDPSSKECCFIWELMSIALNQMASEGLIDHDKLDKFNIPQYTPSPAEVEAEVKKEGSFVIDRLAVSKVRWDAYDDGNEDGARKDGGY TVAACMRAVAEPLLVSQFGGGEIIDEVFRRYRVIVSERMANEKTEFVNGDYGNFNFQCPMKNAMITKLKSRSQWLQQQLANASTRGSERWTGPCQAIPLQ KEELQQFNLHVLSLQQSFLCNLGLQTNPSWKAQCAWVVYRHSSAAPVFSPAVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10025993 [exp]	0	1
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037287 [exp]	4.9	0.6987
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	5.3	0.7420
AT4G28290			unknown protein		Lus10033693 [exp]	7.2	0.7453
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	11.9	0.7421
					Lus10039897 [exp]	18.7	0.7430
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	19.7	0.7106
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10013895 [exp]	24.9	0.7200
AT3G03440			ARM repeat superfamily protein...		Lus10033593 [exp]	44.5	0.7176
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	48.7	0.7116
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	58.5	0.6877

Compare expression of checked genes

Lus10025993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.