Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 572 / 0 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 449 / 6e-153 Glycosyl hydrolase superfamily protein (.1) AT5G01930 416 / 4e-139 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10900 410 / 2e-137 Glycosyl hydrolase superfamily protein (.1) AT1G02310 376 / 2e-124 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT2G20680 374 / 4e-123 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 367 / 2e-120 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 300 / 3e-96 Glycosyl hydrolase superfamily protein (.1) AT5G66470 266 / 8e-82 RNA binding;GTP binding (.1) AT1G30960 63 / 5e-10 GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014288 [exp] 783 / 0 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 427 / 1e-143 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014289 [exp] 420 / 3e-141 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10007900 [exp] 418 / 6e-140 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 409 / 1e-136 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 396 / 2e-126 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 380 / 4e-126 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 381 / 5e-126 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 380 / 1e-125 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120500 [exp] 644 / 0 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 632 / 0 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 538 / 0 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 432 / 4e-146 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 417 / 1e-139 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 418 / 5e-139 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 384 / 4e-127 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 360 / 2e-117 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 297 / 2e-94 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.007G021900 [exp] 258 / 6e-79 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5) CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10025995 pacid=23173103 polypeptide=Lus10025995 locus=Lus10025995.g ID=Lus10025995.BGIv1.0 annot-version=v1.0 ATGGAGCTTGCTTCAAGTCTCTCCGCTGCTTTCCCTGCGGATAAGCTCGCGCCTAACTCCATACCGAGTTTCACCACATCCCGCCATTTCTGCGAGAGGA ACTTTTCCAGAGCGACTCAAATTCGAATCAAAGCCACCGCCGGGGGTTTCACTTCTCGGAAGAGGAATCCTCCGCGCCGGCGTCTCTACTCGCTCAACAA TCAGCTTTTAATCGACGAACAAGAACTCGACGAAGACGACGGTGATGAAGAAGGCCAAGAAGAAGATGAGTATGACACTGTGGATGACGCTGCCATTTTG TCGCTTAGCATGAAGCCAGACAGGACCATGGCCTTACTCGACGACTATGAGATGGAAGAGCTTGACTACTCCGCTGACCCTAACCATCGGAGCGGATTTG TTGCTGTTCTTGGGAAGCCCAATGTTGGAAAGAGTACATTGTCCAACCAGATGATTGGGCAGAAGTTGTGTATAGTTACGGATAAGCCTCAAACTACCAG GCATCGAATTCTTGGTATATGCTCTGCTCCAGAATATCAGATCGTACTCTATGATACGCCCGGTGTGATGCAGAAGCAAATGCACAAACTTGATACTATG ATGATGAAGAATGTTCGAAGAGCAGCGGTTGACGCAGATTGTGTACTAGTTATTGTTGATGCATCCAAGACGCCTGAGAAGATTGATGAGGTGTTGGAAG AAGGCGGGAGTGGCCTCGGAGAGGACGTGCCTGTCTTGTTAGTTCTGAACAAAAAGGATCTCATCAAACCTGGTGAAATTGCAAAGAAACTTCAGGTAGC AACAGCAGCCAGACTTGACATTGAAGATTTCTTGCAGAAGAAAGTCTATATTGAGGGTTTCATCAACGCCGCAGGAGACGATTTCATTAGGACCAGAGGA ACTCATTTCCTGCTGAACGGAAACCTCTTCTACGCAAATGGGTTCAATGCCTACTGGCTAATGTACGTCGCCTCGGACCCTTCCCAGAGATCCAAAGTGT CGGCTGCCTTCCAAGAAGCCAAGTCCCATGACCTAACCGTTGCTCGCACTTGGGCTTTCAGCGATGGCGGTTACAGGCCGCTTCAGTACGCCCCTGGCTC CTACAACCAAGACATGTTTAAGGGGCTGGATTTTGTGGTGTCGGAGGCAAGAAGGCATGGGGTGAAGCTGATAATGAGCTTAGTGAACAACTATGACAGC TTTGGTGGGAAGAAACAGTATGTGAACTGGGCTAGAGCTCAAAGCGGTCGATATCTTGCTTCTGATGATGATTTCTTCACTGATCCTGTTGTTAAAGGCT ACTACAAGAATCATATACAGACTGTTCTTAACAGACAGAACACTTTCACTGGAATTCGTTACAAAGACGATTCTACAATCATGGCTTGGGAGCTGATGAA CGAGCCCAGATGCACTTCTGATTCTTCTGGCAGGACTATCCAGGCGTGGATTACGGAGATGGCCTCCTTTGTGAAGTCAATAGACAGAAAACACTTGCTG GAAGCTGGTTTAGAAGGTTTCTACGGACCATCTACTCCTCAAAAGATGAACATTAACCCTTCAGTTCAAGTTGGTACAGATTTCATCGCCAACAACAAAG TTCCTGGCATTGACTTCGCTACCGTCCATTCATATCCGGATCAATGGCTAACAAACTCCAACGAACAATCCCAGCTGTCATTCATGAACAACTGGCTCAA CGCCCACATCCAGGACGCACAGTACATCATCGGAAAGCCAATCCTCATAGCCGAGTTTGGAAAGTCGTGGAAGGACTCTGGGTTCACCACCAACCAGAGA GACCAGATGTTCAATGCCGTGTACTACAAGACATACGCCTCAGCTAAACGCGGAGGAGCTGCAGGAGGGGCACTGTTCTGGCAGCTCCTGACAGAGGGTA TGGACAGCTTCCGAGATGGGTACGAGGTGGTTTTAGGGGAGACTTCCTCGACGACGAATTTGATAAGGCAGCAGTCTCACAAGCTGTATCAGATCCGGAA GATATTTGCTAGGATTAGGAATGCCAAGAGGTGGAAGAGAGCCGGAGGTGGAGCGAGGATGAGTGGGCGTAGGAATGGTGGGAGAAAGGGTATTGGTAAC TGA
AA sequence Show only first row Show all	>Lus10025995 pacid=23173103 polypeptide=Lus10025995 locus=Lus10025995.g ID=Lus10025995.BGIv1.0 annot-version=v1.0 MELASSLSAAFPADKLAPNSIPSFTTSRHFCERNFSRATQIRIKATAGGFTSRKRNPPRRRLYSLNNQLLIDEQELDEDDGDEEGQEEDEYDTVDDAAIL SLSMKPDRTMALLDDYEMEELDYSADPNHRSGFVAVLGKPNVGKSTLSNQMIGQKLCIVTDKPQTTRHRILGICSAPEYQIVLYDTPGVMQKQMHKLDTM MMKNVRRAAVDADCVLVIVDASKTPEKIDEVLEEGGSGLGEDVPVLLVLNKKDLIKPGEIAKKLQVATAARLDIEDFLQKKVYIEGFINAAGDDFIRTRG THFLLNGNLFYANGFNAYWLMYVASDPSQRSKVSAAFQEAKSHDLTVARTWAFSDGGYRPLQYAPGSYNQDMFKGLDFVVSEARRHGVKLIMSLVNNYDS FGGKKQYVNWARAQSGRYLASDDDFFTDPVVKGYYKNHIQTVLNRQNTFTGIRYKDDSTIMAWELMNEPRCTSDSSGRTIQAWITEMASFVKSIDRKHLL EAGLEGFYGPSTPQKMNINPSVQVGTDFIANNKVPGIDFATVHSYPDQWLTNSNEQSQLSFMNNWLNAHIQDAQYIIGKPILIAEFGKSWKDSGFTTNQR DQMFNAVYYKTYASAKRGGAAGGALFWQLLTEGMDSFRDGYEVVLGETSSTTNLIRQQSHKLYQIRKIFARIRNAKRWKRAGGGARMSGRRNGGRKGIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	1.7	0.9104
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	3.7	0.8835
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	5.0	0.8253
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	6.0	0.8539
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	8.9	0.8614
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	9.8	0.8660
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.5	0.8699
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	11.5	0.8546
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	12.0	0.8512
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	12.7	0.8597

Compare expression of checked genes

Lus10025995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.