Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50910 270 / 1e-85 unknown protein AT5G66480 218 / 8e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014290 [exp] 737 / 0 AT3G50910 313 / 2e-102 unknown protein Lus10041772 [exp] 570 / 0 AT3G50910 313 / 3e-102 unknown protein Lus10028325 [exp] 566 / 0 AT3G50910 305 / 3e-99 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120600 [exp] 367 / 7e-123 AT3G50910 230 / 6e-70 unknown protein Potri.007G022100 [exp] 366 / 1e-122 AT3G50910 240 / 5e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025996 pacid=23173175 polypeptide=Lus10025996 locus=Lus10025996.g ID=Lus10025996.BGIv1.0 annot-version=v1.0 ATGCCTGCTTTTAGTGCTATAACGCTGGACAGGTTGTTAGAACCTGGAGCTTCTAAATCTGTCGACAAGTCTGTTCCTCGCAGCTCCGTTCCAGTTCCGA AGCCAAAGCCTCCAGCTCGTCCTAAGCTGCAAAGGAGGAACAGTACATCAATCACAGAGAGGAGTCCACATCGTCCGCAGCTAACCCCGTCACTGTATAC AACTCCTGAAGCAACTCCTGTCCCACCTGGTTCACCGAATTCTGATACCGCATCACCATATATTATCAACCACAAAAGAAGGGGTCCACGGCTTTCAAAG AGTGTTTCTGTAGATAGCATTGCATCTCAGAAGAAAGCCTTAGACAGAGAGGAAGTCAGTGACTCTTCCAAGGGTCCTGAAGTTCATGTGGAGCTCACTA GGGATCGGCCTGGTGCTTCGACGCATCTTGATTTTGATAAAGTGGAGCATAAGAAGGTAAGTCATGAGAGCCCAAAGGAAAAGGAACTTCCTAATGGTGT CCTTAATCTGTCTACGGAAGAAGTTCATATCAGTGGTCACCGTGATGGTGCAATGGTGAGCAGTGACGGGGAAGGTGGAATTAGTAACTCGAGGCATGCC TTTATGAAGGAAAAACATAGTCCGGGTGCACGTGGTAGCGATATTGATGACTTTTTTTTTCCGCAAGATTCAATGAGTCATGCTAGCACTACCGACGGTG AAGATAATGTTGCAAATTCTGCTAAACTGAGTAGTAGTACACAAATGGCAGAGTTTTTTGATGCATCGGAAGAATTGTCAACTGAAAGTGGTTTGCAGTC TGCTCTGCACGATTTTCAAACTGAATTGCGGGAGACAAGATTAAGTTTATTGATGGAGCAAGAGAAGCGCAGGCAGGCAGAGGATGTTCTGAAGAATATG CAAAGCCAATGGGATAGGATTAGGGAACAATTAGTTAATGCAGGGCTTTGTGTTCCCCCTTGTCCTATTGGTGTATCTGCGAGTGATGATCCAATCAGTA CTGATACTGCAGAGGAGCTGTGCCAGCAGCTGGATATAATTCGCTTCGTATCCAATTCAATCGGAGGGGGCATTGCAAGAGCTGAGATGGAGATGGAAAT GCAAGCACAGATTGAGACAAAGAACTTTGAGGTTGCCCGATTGGTTGACCGCCTTCATTACTATGAGGCTGTGAATCGAGAAATGACTCAAAGGAACCAA GAAGTCGTGGAATTGGCTCGTCGGAATAGGCACGTTCAGAAAAGGAGGCAACGATGGGTTTGGGGTTCCATTGTAGCTGCCATTACTCTTGGCAGTGCAG CTCTAGCGTGGTCTTACCTTCCATCAAGAGGAGAATCGCCTTCCAACAGCAGTTCCTTGGATACAGAACGGGACAGTTCATCGTCAGATTAA
AA sequence Show only first row Show all	>Lus10025996 pacid=23173175 polypeptide=Lus10025996 locus=Lus10025996.g ID=Lus10025996.BGIv1.0 annot-version=v1.0 MPAFSAITLDRLLEPGASKSVDKSVPRSSVPVPKPKPPARPKLQRRNSTSITERSPHRPQLTPSLYTTPEATPVPPGSPNSDTASPYIINHKRRGPRLSK SVSVDSIASQKKALDREEVSDSSKGPEVHVELTRDRPGASTHLDFDKVEHKKVSHESPKEKELPNGVLNLSTEEVHISGHRDGAMVSSDGEGGISNSRHA FMKEKHSPGARGSDIDDFFFPQDSMSHASTTDGEDNVANSAKLSSSTQMAEFFDASEELSTESGLQSALHDFQTELRETRLSLLMEQEKRRQAEDVLKNM QSQWDRIREQLVNAGLCVPPCPIGVSASDDPISTDTAEELCQQLDIIRFVSNSIGGGIARAEMEMEMQAQIETKNFEVARLVDRLHYYEAVNREMTQRNQ EVVELARRNRHVQKRRQRWVWGSIVAAITLGSAALAWSYLPSRGESPSNSSSLDTERDSSSSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50910			unknown protein		Lus10025996 [exp]	0	1
AT3G50910			unknown protein		Lus10014290 [exp]	2.0	0.8531
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	6.9	0.8139
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	8.1	0.7973
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	9.4	0.7361
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	17.0	0.7942
AT2G40860			protein kinase family protein ...		Lus10024474 [exp]	18.1	0.7202
AT1G49000			unknown protein		Lus10042953 [exp]	18.3	0.7906
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	19.1	0.7527
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	19.3	0.7763
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	19.4	0.7377

Compare expression of checked genes

Lus10025996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.