Plant FIBer expression Database

Lus10025997 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50900 69 / 4e-16 unknown protein
AT4G36500 67 / 2e-15 unknown protein
AT2G18210 67 / 2e-15 unknown protein
AT5G66490 66 / 5e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025998
[exp]
196 / 1e-66 AT2G18210 72 / 3e-17 unknown protein
Lus10014291
[exp]
196 / 2e-66 AT4G36500 71 / 7e-17 unknown protein
Lus10028324
[exp]
125 / 2e-38 AT2G18210 88 / 1e-23 unknown protein
Lus10041771
[exp]
120 / 2e-36 AT2G18210 88 / 1e-23 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G022300
[exp]
91 / 5e-25 AT3G50900 84 / 3e-22 unknown protein
Potri.007G022200
[exp]
69 / 7e-16 AT2G18210 56 / 8e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10025997 pacid=23173083 polypeptide=Lus10025997 locus=Lus10025997.g ID=Lus10025997.BGIv1.0 annot-version=v1.0
ATGTTGAGAGCGTTGAGCACTCGCATAAGCCAGTACAAGTACGACAAGCTAGTGGACGAATCTCCCGTGGGTCCTCTGATTGGAAGCTATAAGCTTACAA
GGAGCAGGACTTTGCCTGTTCAGTTTCTCGGGGAGCGATCGTCCAGTTACAAGCTATCTCTTAAGTTGAATTTACCAGCACTACGAGTCCCGGCGGTCAA
GAAGGCAGACAGCAAAAGCCACCCTCTGTTCAGCCTGTTCAATTCTCGACGGAAGAAGAGAACCACTTCAAGGCCAGAGTTCGCTAGATACATCCAGTAT
GTCAAGGAAGGTGGACTGTGGGATTCTAATTCTGGGATACCTGTAATGTATTACAAGTAA
AA sequence
>Lus10025997 pacid=23173083 polypeptide=Lus10025997 locus=Lus10025997.g ID=Lus10025997.BGIv1.0 annot-version=v1.0
MLRALSTRISQYKYDKLVDESPVGPLIGSYKLTRSRTLPVQFLGERSSSYKLSLKLNLPALRVPAVKKADSKSHPLFSLFNSRRKKRTTSRPEFARYIQY
VKEGGLWDSNSGIPVMYYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G36500 unknown protein Lus10025997
[exp]
0 1
AT2G18210 unknown protein Lus10025998
[exp]
1.0 0.9484
AT2G38470 WRKY ATWRKY33, WRKY3... WRKY DNA-binding protein 33 (.... Lus10026409
[exp]
5.1 0.8173
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10038815
[exp]
11.4 0.8041
AT4G39830 Cupredoxin superfamily protein... Lus10022504
[exp]
11.7 0.7854
AT5G07610 F-box family protein (.1) Lus10024021
[exp]
12.4 0.7830
AT2G32030 Acyl-CoA N-acyltransferases (N... Lus10039344
[exp]
13.6 0.7843
AT1G60730 NAD(P)-linked oxidoreductase s... Lus10037408
[exp]
13.7 0.7040
AT5G42820 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H t... Lus10008648
[exp]
15.4 0.7459
AT2G26530 AR781 Protein of unknown function (D... Lus10032766
[exp]
15.5 0.7704
AT3G60540 Preprotein translocase Sec, Se... Lus10025029
[exp]
19.0 0.7744

Lus10025997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.