Plant FIBer expression Database

Lus10025998 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18210 64 / 2e-14 unknown protein
AT3G50900 62 / 2e-13 unknown protein
AT4G36500 60 / 9e-13 unknown protein
AT5G66490 58 / 4e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025997
[exp]
177 / 7e-59 AT4G36500 73 / 1e-17 unknown protein
Lus10014291
[exp]
176 / 3e-58 AT4G36500 71 / 7e-17 unknown protein
Lus10041771
[exp]
120 / 2e-36 AT2G18210 88 / 1e-23 unknown protein
Lus10028324
[exp]
119 / 4e-36 AT2G18210 88 / 1e-23 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G022300
[exp]
86 / 5e-23 AT3G50900 84 / 3e-22 unknown protein
Potri.007G022200
[exp]
67 / 2e-15 AT2G18210 56 / 8e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10025998 pacid=23173222 polypeptide=Lus10025998 locus=Lus10025998.g ID=Lus10025998.BGIv1.0 annot-version=v1.0
ATGTTGAGAGCGTTGAGCACTCGCATAAGCCAGTACAAGTACGACAAGCTAGTGGACGAATCTCCCGTGGGTCCTCTGATTGGGGGCTATAAGCTTACAA
GGAGCAGGACTTTGCCTGTTCAGTTTCTTGGGGGAAGATCATCCAGTTACAAGCTATCTCTCAAGTTGAATTTACCAGCACTACTTCCAGCGGCCAAGAA
GGCAGACAGCAAAAGCCACCCGCTTTTCAGTCTGTTCAATTCTCGACGGAAGAAGAGAACCACTTCAAGGCCAGAGTTCGCGAGGTACATCCAGTATGTC
AGGGAAGGTGGACTGTGGGATGGTAATTCTGGCCTACCTGTGATGTATTACAAGTAG
AA sequence
>Lus10025998 pacid=23173222 polypeptide=Lus10025998 locus=Lus10025998.g ID=Lus10025998.BGIv1.0 annot-version=v1.0
MLRALSTRISQYKYDKLVDESPVGPLIGGYKLTRSRTLPVQFLGGRSSSYKLSLKLNLPALLPAAKKADSKSHPLFSLFNSRRKKRTTSRPEFARYIQYV
REGGLWDGNSGLPVMYYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G18210 unknown protein Lus10025998
[exp]
0 1
AT4G36500 unknown protein Lus10025997
[exp]
1.0 0.9484
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10038815
[exp]
3.5 0.8510
AT4G39830 Cupredoxin superfamily protein... Lus10022504
[exp]
6.5 0.8261
AT2G32030 Acyl-CoA N-acyltransferases (N... Lus10039344
[exp]
8.1 0.8128
AT3G52105 unknown protein Lus10019704
[exp]
13.9 0.8070
AT5G08790 NAC ATAF2, ANAC081 Arabidopsis NAC domain contain... Lus10033493
[exp]
15.2 0.8005
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10014925
[exp]
19.5 0.8239
AT5G25930 Protein kinase family protein ... Lus10005491
[exp]
24.0 0.7256
AT4G28400 Protein phosphatase 2C family ... Lus10039853
[exp]
24.3 0.7924
AT2G38470 WRKY ATWRKY33, WRKY3... WRKY DNA-binding protein 33 (.... Lus10026409
[exp]
25.1 0.7647

Lus10025998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.