Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 330 / 2e-116 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 324 / 4e-114 ATPPA3 pyrophosphorylase 3 (.1) AT3G53620 322 / 5e-113 ATPPA4 pyrophosphorylase 4 (.1) AT4G01480 318 / 2e-111 ATPPA5 pyrophosphorylase 5 (.1) AT2G18230 316 / 8e-111 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 72 / 9e-15 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014292 [exp] 400 / 5e-144 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10041767 [exp] 358 / 2e-127 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10028320 [exp] 355 / 3e-126 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10024422 [exp] 325 / 2e-114 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 326 / 1e-112 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10005139 [exp] 316 / 9e-111 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 315 / 1e-110 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10037239 [exp] 71 / 1e-14 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 71 / 2e-14 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022700 [exp] 345 / 3e-122 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 328 / 2e-115 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 328 / 2e-115 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 318 / 9e-112 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.009G081200 [exp] 71 / 1e-14 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 68 / 1e-13 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10025999 pacid=23173236 polypeptide=Lus10025999 locus=Lus10025999.g ID=Lus10025999.BGIv1.0 annot-version=v1.0 ATGGCTGAAAACGGCGAAAATAGCGGAAGATCCTCGCAGTATGCCCGTCCAGCACTTAATGAAAGGATTCTTTCTTCGATGACACGAAGATCTGTAGCAG CACATCCATGGCATGATCTGGAGATTGGACCTGGTGCTCCAGCAGTTTTCAACGTTGTCGTTGAAATAAGCAAAGGTAGCAAGGTTAAGTATGAGCTTGA CAAGAAATCTGGCCTTATAAAAGTTGATCGCATTCTCTACTCGTCAGTTGTGTACCCGCATAACTATGGTTTCATTCCTAGAACCCTTTGTGAGGATAGT GATCCTATGGATGTCCTGATACTGATGCAGGAGCCTGTCCTCCCTGGTACTTTTCTCCGTGCTCGTGCCATAGGATTAATGCCTATGATTGACCAGGGTG AGAAGGATGACAAAATCATAGCAGTATGTGCTGATGATCCTGATGTGCGTCATTACAGGGACATTAAGGAGCTTCCTCCTCATCGATTGGCTGAGATCCG TCGCTTTTTTGAGGAGTACAAGAAGAACGAGAACAAGAAAGTTGATGTAGAAGATTTCTTGCCACCAGAAGCAGCCGTTGATGCCATCAAGTATTCCATG GATCTCTATGCATCCTACATCGTCGAGAACTTGAGGCAGTAA
AA sequence Show only first row Show all	>Lus10025999 pacid=23173236 polypeptide=Lus10025999 locus=Lus10025999.g ID=Lus10025999.BGIv1.0 annot-version=v1.0 MAENGENSGRSSQYARPALNERILSSMTRRSVAAHPWHDLEIGPGAPAVFNVVVEISKGSKVKYELDKKSGLIKVDRILYSSVVYPHNYGFIPRTLCEDS DPMDVLILMQEPVLPGTFLRARAIGLMPMIDQGEKDDKIIAVCADDPDVRHYRDIKELPPHRLAEIRRFFEEYKKNENKKVDVEDFLPPEAAVDAIKYSM DLYASYIVENLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10025999 [exp]	0	1
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10009821 [exp]	11.5	0.7031
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	29.5	0.6521
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	37.9	0.7057
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	47.8	0.6977
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	50.2	0.6755
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	111.4	0.6610
AT3G27030			unknown protein		Lus10041551 [exp]	115.6	0.6440
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	145.1	0.6469
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	153.1	0.6360
AT2G35840			Sucrose-6F-phosphate phosphohy...		Lus10015995 [exp]	171.2	0.6341

Compare expression of checked genes

Lus10025999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.