Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 96 / 1e-23 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 89 / 4e-21 unknown protein AT5G02510 75 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014293 [exp] 379 / 8e-135 AT1G80040 129 / 1e-36 unknown protein Lus10039988 [exp] 110 / 1e-28 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 100 / 5e-25 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 100 / 1e-24 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 97 / 1e-23 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10025332 [exp] 78 / 7e-17 AT5G02510 152 / 4e-46 unknown protein Lus10024410 [exp] 77 / 2e-16 AT5G02510 149 / 8e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 106 / 2e-27 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.006G066000 [exp] 105 / 5e-27 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 102 / 1e-26 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10026000 pacid=23173166 polypeptide=Lus10026000 locus=Lus10026000.g ID=Lus10026000.BGIv1.0 annot-version=v1.0 ATGGCGACTGCAACCCTCTGCACTCCACCATCAATCTGCGGAACCAAACGATTGCATCTCTTTGACGACGACGACAACTACGACTACAACCCATCTCCTT TCACCAAGAAACGACGCTTCACTCCTCCGGGTCTCGAACGCCTCCAGGCCAAATTCCCCTCCATGGAGGTCGCAGTTCTCGAGCTCGCCCTAGAAGAATG CGGCGGCAACATAGACGCCGCGATCTACCACCTCTGCCGCCTCTCCCTTCAAGAAGAAGAGGAAGAAACTGCTTCCAAACCTGACCCGACATCGCCGGGA AGGAAAACCGACTCATCGGTCGGTAGTGGGACCCAGCAGTGGGCGGAGCTGCTAGTGACGGAGATGACGAAAGCGACAAGCGTTGACGATGCTAGGTCAC GCGCTGCTAAGTTATTGGAAGTTGTGGAGAAGGCGGTGGTGGAGAAGAATGAGAGCAGCGGCGGCGGCGGACTGAGGAAAAAGGTGGAGGTTTTGGGGAA GGAGAACGCGTTGCTGAAACGCGCGGTGGCGATTCTCTACGAGCGGCAGAAAGACCAGAAGGAGAAGGAAGCTGAATCGGTGGCCCTCAGGAAATTGGTG GCCGAATACCATCAGAAGCTGAAGACCCTAGAAGCTAACAATTTCGCCCTTTCCATGCACTTGAATCGTGCTCTCTGCGGCGGCGGCTCAATTTCCGGCC ACTGCCGCCCGGATGTCTTCTGA
AA sequence Show only first row Show all	>Lus10026000 pacid=23173166 polypeptide=Lus10026000 locus=Lus10026000.g ID=Lus10026000.BGIv1.0 annot-version=v1.0 MATATLCTPPSICGTKRLHLFDDDDNYDYNPSPFTKKRRFTPPGLERLQAKFPSMEVAVLELALEECGGNIDAAIYHLCRLSLQEEEEETASKPDPTSPG RKTDSSVGSGTQQWAELLVTEMTKATSVDDARSRAAKLLEVVEKAVVEKNESSGGGGLRKKVEVLGKENALLKRAVAILYERQKDQKEKEAESVALRKLV AEYHQKLKTLEANNFALSMHLNRALCGGGSISGHCRPDVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80040			unknown protein		Lus10026000 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	3.5	0.9022
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	5.3	0.8939
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10040807 [exp]	6.0	0.8859
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	7.7	0.8791
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10034595 [exp]	8.9	0.8811
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	14.7	0.8692
					Lus10041517 [exp]	16.1	0.8489
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	19.0	0.8809
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	22.1	0.8752
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	22.3	0.8566

Compare expression of checked genes

Lus10026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.