Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18245 272 / 3e-88 alpha/beta-Hydrolases superfamily protein (.1) AT3G19970 222 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014294 [exp] 555 / 0 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1) Lus10028314 [exp] 298 / 1e-99 AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) Lus10017376 [exp] 226 / 1e-69 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010171 [exp] 222 / 3e-68 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 147 / 4e-43 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023000 [exp] 346 / 5e-117 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G075400 [exp] 215 / 1e-65 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G089000 [exp] 213 / 1e-64 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05705 [flax] [poplar] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Lus10026001 pacid=23173261 polypeptide=Lus10026001 locus=Lus10026001.g ID=Lus10026001.BGIv1.0 annot-version=v1.0 ATGGAAGGTTACATGGCAGCGAGAGTTTTCAACCGGCAGGTTCTCTTGAAATCCACCCATTTTCTCAGACCTGTGAATCCTCGATATAATCGCTCGAGCA CCATTGTTCGTGCTGCCCTAATCACGCCTCCGTACTCACGACCTCCTATCAATCTCTTCCTCTCGCTTTCATCTTCTCATCTCTGCAACCCATCCATTCA CAGATTGGGAAATTGCAGCAGTTTTCAATCGAGCTCGAAGGAGGAGGGGTTATTCCGCTGGCATCCGGCTCCTGAAACTGGAATCAATGGAGAACGGAGT CTTCTTCTGGGACCGAAAGATCCGGTAACGACGGTGGTATTGCTGGGGTGGCTAGGAGCGAAGCAGAAGCACCTCAGGAAGTACGTGGAGTGGTACAACT CGCTAGGGATCCACGCGATTACCTTCGTTGTTGATGTTGGAGAGCTGCTTCGTTTCGATTTGGGGGAGAGAGTGGAGAAACGGATCTCTGCTCTAGCCAG CGAGCTCGTTTCCTGGGTGGGCGAGAGTAGTGAAAAAGAAGATGGCCGAGAGCGTTGTTTGCTGTTCCACACTTTCAGCAACACTGGTTTTCTGACGTAT GGTTACATTCTTGACATTCTGCAAGGTAGAGAAAGTGTGGCGGACAAGGTCAGAGGTTGCATTGTTGATTCAGGTGGTGCTGGGCTGCTGGATCATAAGG TCTGGGCTGCTGGGTTTGCTGCAGCTATCTTGAAGAAACGCAGCTCCGCTGTAACATTTTCAGAAGACGAAGCCAACAACCGAAAACAATTCGACAGTGA ACCCAGCAATAATCAATCTAATGTAACTGAAACGTTTGTACTAGGAGCACTGGAGATGTTCTTTTCTGTTGTCCTCAAGTTTCCTGAAGTCGATAGGCAA AAGATTGTGGCTGCAGTCTCGAAGAACCAGCCATCGTATCCTCGTCTTTACATGTACAGTGCCGGAGACAAAGTCATTCCACACGAGGCGATCGAAGCTG CGATAGAGGAGGAATTAAGGAAGGGAAGAAGGGTTGTCTCCCACAATTTTGGATCATCCCCACATGTTGATCACTACCGGACATTCCCGGATCAGTACCT ATTGGTCCTTTCCAGATTTTTTAAAGAATGTTTGTCAAATGTGGAAGTAGCAGACATGAAAAACTAA
AA sequence Show only first row Show all	>Lus10026001 pacid=23173261 polypeptide=Lus10026001 locus=Lus10026001.g ID=Lus10026001.BGIv1.0 annot-version=v1.0 MEGYMAARVFNRQVLLKSTHFLRPVNPRYNRSSTIVRAALITPPYSRPPINLFLSLSSSHLCNPSIHRLGNCSSFQSSSKEEGLFRWHPAPETGINGERS LLLGPKDPVTTVVLLGWLGAKQKHLRKYVEWYNSLGIHAITFVVDVGELLRFDLGERVEKRISALASELVSWVGESSEKEDGRERCLLFHTFSNTGFLTY GYILDILQGRESVADKVRGCIVDSGGAGLLDHKVWAAGFAAAILKKRSSAVTFSEDEANNRKQFDSEPSNNQSNVTETFVLGALEMFFSVVLKFPEVDRQ KIVAAVSKNQPSYPRLYMYSAGDKVIPHEAIEAAIEEELRKGRRVVSHNFGSSPHVDHYRTFPDQYLLVLSRFFKECLSNVEVADMKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10026001 [exp]	0	1
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	4.8	0.6963
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	13.3	0.6892
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	14.5	0.6738
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	17.1	0.6641
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	24.9	0.6785
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	41.6	0.6387
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032365 [exp]	58.4	0.6468
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	73.5	0.6295
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023142 [exp]	75.3	0.6359
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	79.7	0.6342

Compare expression of checked genes

Lus10026001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.