Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 790 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 788 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 762 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014295 [exp] 863 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 830 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 830 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 830 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 817 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10032447 [exp] 795 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10042947 [exp] 793 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 183 / 9e-56 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 171 / 4e-49 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141000 [exp] 803 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.003G159000 [exp] 801 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 791 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10026003 pacid=23173281 polypeptide=Lus10026003 locus=Lus10026003.g ID=Lus10026003.BGIv1.0 annot-version=v1.0 ATGGCCAATGGGCAAGGCGAGCCTTGGGCTCCGGAGTCCAGAGGCCTGAAGAAGAAACCCTTGGCCGCAGAAGAGCAAGGAGGGACAGCAGGCTATATAA ACCAAGCACCAGCAATTCGAGGGTTTGCCGCTTCCAATCGAGAGAGTCCTCTTATTCTATCTCTTTCGCTCTCTCAGCTTCGTCAACCCGCCATTCCTTC TTTCACAATGGCAGACAGCGAAGACAAGAACATTGAGATCTGGAAGATCAAAAAGCTTATTAAGTCCCTGGAAGCTGCCCGGGGTAATGGGACCAGCATG ATTTCCCTAATCATACCTCCTCGTGATCAGATTTCTCGTGTTGCAAAAATGCTCGGGGATGAATATGGTACTGCTTCTAATATTAAGAGTAGGGTTAACC GTCAGTCTGTGCTTGGTGCCATCACATCTGCTCAGCAGAGGCTCAAGCTTTACAACAAGGTCCCTACTAATGGACTTGTTCTCTACACTGGAACTATTGT CACTGATGATGGAAAGGAGAAAAAGGTTACCATGGACTTTGAGCCTTTTAGGCCGATTAATGCATCTCTCTACCTTTGTGACAACAAGTTTCATACTGAA GCTTTGAATGAACTTCTGGAGTCTGATGACAAATTTGGTTTCATTGTCATGGATGGTAACGGTACCCTGTTTGGAACGCTTAGTGGCAACACCAGAGAAA TTCTGCACAAGTTCTCGGTTGACCTGCCAAAGAAACACGGAAGAGGAGGGCAGTCAGCACTTCGATTTGCCAGGCTCCGAATGGAGAAGCGCCACAACTA TGTGAGGAAGACAGCTGAACTTGCTACCCAATTTTTTATTGACCCAGCCATCAGTCAGCCTAATGTATCAGGTCTAATACTTGCTGGATCTGCTGACTTC AAGACTGAGCTGAGTCAATCAGATATGTTTGATGCTCGACTTCAGGTTAAGATTCTGAACGTGGTTGATGTGTCCTATGGAGGGGAGAATGGATTTAACC AGGCAATCGAGCTTTCTTCTGAGATTTTGTCCAATGTGAAATTTATCCAGGAGAAGAAGCTGATAATGAAATACTTTGAAGAGATTAGTCAAGATACTGG AAAATATGTCTTTGGCGTGGATGACACTTTGACAGCTTTGGATATGGGTGCCGTTGAAATTCTCATTGTTTGGGAGAATTTGGAGGTTAATAGGTATGAG TTGAAGAACAGTTCAACTGGTGAAATTGTCGTAAAACATATGACTAAGGAGCAAGAGTCCAATGAGAATAGCTTTAGGGATGCAGCCACCTCAGCAGAAC TGGAAGTTCAGGAGAAGATGCCTCTGCTTGAGTGGTTTGCTAATGAATACAAGCGATTTGGTTGCACACTCGAGTTTGTCACGAACAAATCACAAGAAGG GTCACAGTTCTGCAGGGGATTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTGGACATGAGATCATTTGATGAGCTTTCTGATGAAGAAGTTTTGGAT GATTCTGAATAG
AA sequence Show only first row Show all	>Lus10026003 pacid=23173281 polypeptide=Lus10026003 locus=Lus10026003.g ID=Lus10026003.BGIv1.0 annot-version=v1.0 MANGQGEPWAPESRGLKKKPLAAEEQGGTAGYINQAPAIRGFAASNRESPLILSLSLSQLRQPAIPSFTMADSEDKNIEIWKIKKLIKSLEAARGNGTSM ISLIIPPRDQISRVAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPTNGLVLYTGTIVTDDGKEKKVTMDFEPFRPINASLYLCDNKFHTE ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFIDPAISQPNVSGLILAGSADF KTELSQSDMFDARLQVKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKKLIMKYFEEISQDTGKYVFGVDDTLTALDMGAVEILIVWENLEVNRYE LKNSSTGEIVVKHMTKEQESNENSFRDAATSAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQVDMRSFDELSDEEVLD DSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	0	1
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	2.2	0.7285
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	4.6	0.7073
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	18.7	0.6649
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	36.7	0.6113
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	39.0	0.6226
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	56.9	0.6225
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	59.3	0.6371
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	69.2	0.6373
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10005123 [exp]	69.6	0.5770
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	80.7	0.6329

Compare expression of checked genes

Lus10026003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.