Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18250 251 / 4e-86 ATCOAD 4-phosphopantetheine adenylyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014296 [exp] 322 / 2e-113 AT2G18250 249 / 5e-85 4-phosphopantetheine adenylyltransferase (.1) Lus10041759 [exp] 277 / 2e-96 AT2G18250 270 / 4e-94 4-phosphopantetheine adenylyltransferase (.1) Lus10028311 [exp] 276 / 5e-96 AT2G18250 265 / 1e-91 4-phosphopantetheine adenylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121200 [exp] 241 / 3e-82 AT2G18250 268 / 6e-93 4-phosphopantetheine adenylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10026004 pacid=23173160 polypeptide=Lus10026004 locus=Lus10026004.g ID=Lus10026004.BGIv1.0 annot-version=v1.0 ATGGGTGTTCAGGATGAATCGGCCGTCAACTACACTATTTCGCCGCCGAACACGTATGGAGCGGTTGTCCTCGGAGGCACGTTTGATCGGTTACACGACG GCCACCGCCTTTTTCTCAAGGCGGCAGCGGAGCTGGCAAGGGAGATAGTCGTGGTTGGAGTTTGCGATGGCCCTATGCTCACCAACAAAAAGTTTCGAGA CCTGATAGAGCCTATAGAGGTCAGGATGCAGAATGTTAACAACTATATCAAGTCTATCAAACCAGAGCTCACGGTGCACGCTGAACCAATTACTGATCCG TACGGACCTTCAATTGTCCTCAAAGACTTAGAAGCTATAGTTGTTAGCAAAGAGACGGTACCAGGTGGCCTGGCAGTGAACAGGAAGAGAGCTGAGAGAG GACTTTCACAGCTCAAGGTTGAAGTTGTGGACCTAGTTTCTGAAGGGTCCACTGGAGAAAAACTGAGCTCTTCAACGCTGAGAAGACTTGAAGCTGAGAA GGCAAAACAACAACAAGCAGCTGATGGAATCATCACCCCACTTGGTGATCCTTAG
AA sequence Show only first row Show all	>Lus10026004 pacid=23173160 polypeptide=Lus10026004 locus=Lus10026004.g ID=Lus10026004.BGIv1.0 annot-version=v1.0 MGVQDESAVNYTISPPNTYGAVVLGGTFDRLHDGHRLFLKAAAELAREIVVVGVCDGPMLTNKKFRDLIEPIEVRMQNVNNYIKSIKPELTVHAEPITDP YGPSIVLKDLEAIVVSKETVPGGLAVNRKRAERGLSQLKVEVVDLVSEGSTGEKLSSSTLRRLEAEKAKQQQAADGIITPLGDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	2.4	0.9418
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	3.3	0.9467
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	4.5	0.9444
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	5.1	0.9147
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	8.0	0.9188
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	8.7	0.9360
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	11.5	0.9274
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	12.4	0.9309
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	14.1	0.9110
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10041298 [exp]	15.9	0.8964

Compare expression of checked genes

Lus10026004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.