Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 728 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 536 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 499 / 4e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 491 / 5e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 480 / 5e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 475 / 1e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 459 / 4e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G29760 463 / 1e-154 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 450 / 1e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 447 / 6e-149 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 1231 / 0 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 527 / 0 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 503 / 3e-171 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 496 / 1e-168 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 479 / 3e-162 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 469 / 3e-158 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 469 / 8e-157 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 466 / 9e-156 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039388 [exp] 445 / 3e-149 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 520 / 2e-178 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 519 / 9e-178 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 517 / 1e-176 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 513 / 8e-176 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 510 / 3e-172 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 497 / 3e-169 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 485 / 2e-164 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 481 / 2e-161 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 474 / 6e-161 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 474 / 1e-160 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026006 pacid=23173133 polypeptide=Lus10026006 locus=Lus10026006.g ID=Lus10026006.BGIv1.0 annot-version=v1.0 ATGAGCCTAATAGCAGTTGCCATGGCATCCTGGCATGTTCCAGTGGCAGCAGCAGAAGTTGCAACCACAAGAGACTCAAAATCAGCACTGCCCACAATGG ATCTGCTAGATCGATGTACAAGTGTGGAGGAAGTGAAGCAAATCCACGCCCACATGTTCAAAACGGGGCGAGCCTCAAACACCAACGCTGTAAGCAAGCT CTTAGTAAGTTGCGCCTCTCCAGCATCAGGCAACTTGGAGTATGCACATAAAGTATTTGACAGATTCCAAGGCAGAGCCAACGCATCAATGTGGAACACT GTGATCAGAGGATACGCCAACAGCAATCAACCAGAGGTGACTTTGTTTCTGTACACCCAGATGCTCACTCACTCGGTTCAACATGACTCTTACACCTTCC CCTTACTGCTTAAAGCCTGTTCTAATCTGTCAGGTTTGGAAGAGACGAGGCAAATTCACGGCCAGATTGTGAAATTCGGGTTCGGCTCCGAAGTCTACGC TACAAATGCTCTTCTCCATGCATATGCTAGCTCCGGTAGTGTAAATAATGCACGCCATCTCTTTGACCTCACGAACCAACCTGATACAGTCACTTGGAAC TCGATGATTAATGGCTATATGAAATGCGGGGAGACAAAGAAAGCAAGCGAGCTATTCAAGGAGATGCCAACCAAAGATAAGATTTCATGGACGATAATGA TTTCTAGGTATGTTCAAGCAGGGCTAGACAAGGAGGCTTTGGAGTTGTTCCATGAGATGCAAGGTGCTGGTGAGAAAGTTGACAAAGTAACACTCACCAC TGCACTTTCCGCTTGCGCTCAGCTCGGAGCTTTGGATCAAGGAAGATGGATTCATGCACACATCAACAGAAGTGGGATCCAAATTGACCCGATTCTCGGA TGTGCTTTGATAGACATGTATGCAAAGTGTGGCAAAATGGAAGAAGCTCTTGAAATGTTTCACAAGTTGGGGACTACTAAAATTGTTCATGCTTGGACTG CGATTATTTTCGGTTTCGCTATTCATGGACAGGGAAGAGAAGCTCTTACTTGGTTTAGCAGAATGAAAGAGGAAGAAGGAATCGAGCCGAACCTCGTCAC GTTTACAGCAATCCTGACTGCTTGCAGCTATGCAGGACTGGTTCAGGAAGGTAAGTCTGTGTTCAAAAGCATAAAGGAATGTCATGCATTGAATCCAACA ATTGAGCATTACGGATGCATGGTTGATCTACTCGGCCGAGCTGGATTATTAACAGAAGCGAAGGATCTGATCAAGAACATGCCTGTCAAACCAAATGCAA TCATCTGGGGTTCACTATTGAAAGCCTGCAAGATTCATGGAAATCTAGAGTTAGGTAAACAAATAGGAAAACTCGCAATTGAAATGAACCCTAATCATGG CGGCAGATACATTCAATTGGCAGAAATTCACGCAGCTGCAAAGGAATGGGAACTGGCAGCTAAGGCAAGAAGGCGAATGAAAGAACACGGAGTGTCGAAA TTACCAGGATGCAGCACAATCAGTGTGGAAGGTACGGTGCATGAATTTTCCGCCGGAGACGGAAGTCATCCGGAAGCTGATGCGATTTACAGCAAATGGC ACTGTATAGCTGAGCGGCTGAGAGAAGAAGGGTATAAACCTGTGACGAGAGAGTTGATGCTTGACCTGGAAGACGGGGAGAAGGAAATTGTTGTTAGTCA GCACAGCGAGAAGCTTGCTGTAGCGTTCGGGTTGATTCATGGAAAAGCAGGGACGGTGATTCGGATTTTCAAGAACCTTCGGGTGTGTGAGGACTGCCAC ACTGCGATGAAACTCATTTCCAGGGTTTATGATAGGGAGATTGTGATGCGCGACAGAGTTCGTTTCCATTGTTTCAGAGAGGGAGAATGCTCTTGTGGTG ATTATTGGTAA
AA sequence Show only first row Show all	>Lus10026006 pacid=23173133 polypeptide=Lus10026006 locus=Lus10026006.g ID=Lus10026006.BGIv1.0 annot-version=v1.0 MSLIAVAMASWHVPVAAAEVATTRDSKSALPTMDLLDRCTSVEEVKQIHAHMFKTGRASNTNAVSKLLVSCASPASGNLEYAHKVFDRFQGRANASMWNT VIRGYANSNQPEVTLFLYTQMLTHSVQHDSYTFPLLLKACSNLSGLEETRQIHGQIVKFGFGSEVYATNALLHAYASSGSVNNARHLFDLTNQPDTVTWN SMINGYMKCGETKKASELFKEMPTKDKISWTIMISRYVQAGLDKEALELFHEMQGAGEKVDKVTLTTALSACAQLGALDQGRWIHAHINRSGIQIDPILG CALIDMYAKCGKMEEALEMFHKLGTTKIVHAWTAIIFGFAIHGQGREALTWFSRMKEEEGIEPNLVTFTAILTACSYAGLVQEGKSVFKSIKECHALNPT IEHYGCMVDLLGRAGLLTEAKDLIKNMPVKPNAIIWGSLLKACKIHGNLELGKQIGKLAIEMNPNHGGRYIQLAEIHAAAKEWELAAKARRRMKEHGVSK LPGCSTISVEGTVHEFSAGDGSHPEADAIYSKWHCIAERLREEGYKPVTRELMLDLEDGEKEIVVSQHSEKLAVAFGLIHGKAGTVIRIFKNLRVCEDCH TAMKLISRVYDREIVMRDRVRFHCFREGECSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	0	1
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	1.4	0.9731
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	2.4	0.9646
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	4.6	0.9554
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	4.9	0.9639
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	5.3	0.9609
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	6.0	0.9538
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	6.3	0.9541
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	6.9	0.9556
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	7.4	0.9516
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	10.0	0.9524

Compare expression of checked genes

Lus10026006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.