Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18280 449 / 3e-157 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 402 / 2e-138 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G25280 380 / 2e-129 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT2G47900 370 / 1e-125 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G76900 364 / 4e-123 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G43640 333 / 4e-111 TUB AtTLP5 tubby like protein 5 (.1) AT3G06380 326 / 4e-109 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 315 / 2e-104 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 295 / 5e-97 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 76 / 1e-15 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014299 [exp] 804 / 0 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10028309 [exp] 672 / 0 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10041757 [exp] 670 / 0 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10033209 [exp] 456 / 8e-160 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 437 / 2e-152 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010645 [exp] 437 / 4e-152 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10010833 [exp] 436 / 8e-152 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10018884 [exp] 369 / 7e-125 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 363 / 1e-122 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023400 [exp] 565 / 0 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 563 / 0 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 454 / 8e-159 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 442 / 4e-154 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G192300 [exp] 386 / 4e-132 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 382 / 4e-130 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 380 / 2e-129 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 368 / 3e-125 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 368 / 3e-125 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 303 / 5e-100 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026007 pacid=23173152 polypeptide=Lus10026007 locus=Lus10026007.g ID=Lus10026007.BGIv1.0 annot-version=v1.0 ATGCCACCTTTCAAGAGTATTGTCCGCGAGCTAAAGGAGATGAAAGACGGGGTTGGGAGTAGGTCTCGGCGGCGCGAGGTGGAAGGGAAACGCTGGCGGG GAAGCAGGGCGAGGTCGCATATAGCTCCTGATGAAAGTTCGTTGGTCGAGAATGAAGAATGTAGTGATGAGCAAGGGCAGTGGGCGGATTTGCCACCTGA GTTGCTTCTCGATATTATCAGGAGGGTTGAGGAGACCGAGTCCTCGTGGCCTGATCGTGCTGTCGTTGTTCATTGCGCTACGGTTTGTAAGTCGTGGAGG GAAGTGACGAGGGATATTGTCAAAACACCTGAGCAGTGTGGATTGCTGACATTCCCTATCTCATTGAAGCAGCCCGGTCCCCGTGAGGCTCCTATACATT GCTACATAAGAAGGGATCCTGCTACTTCAACGTTTCTGTTGTTTCAAGGATTGATGCCTTCGGAGGGTGAGAAGGATAAATTGCTTCTGGCAGCAAGAAG AATCAGAAGGACAACATGTGCAGATTTCGTGATATCTTTGGCTCCGAACGATTTCTCCCGGTCGAGCAACAACTACATTGGTAGACTCAGATCGAACTTT TTGGGGACCAAGTTCACCATCTTGGATAGGCAATCAAGTCACGAGGTTCCAATGCAGTTGGCCAGGTGGACGAGTCACAAATTGCATTCCAGAAGAGGTT CTTCGAGGACCCCTGCATCGAACTACGCCATAGGCACGATTAATTACGAGCTGAACGTTCTCCGCACAAGAGGGCCGAGAAGAATGCACTGTGTCATCAA TTCTATTCCCGTCTCTTCCATGGAGGAAGGTGGGAGTGCTCCAACAATAACATCATTGCCCGAGGCAGCAGCCGGCGAACAGTTTTCTCCTTCACCGGTC TCCAAAGGGAAGGGACCTGGATCAGACGTCAGTTTCACCAGCCCATCAGAGTCGCCGATGATAATCCCTGACTCTGGGGAGCCGCTAGTCCTGAAAAATA GGGCTCCTAGATGGCATGAGCAGCTTCAATGTTGGTGCTTGAATTTCAAAGGGCGTGTTACTGTTGCTTCCGTCAAGAATTTCCAACTTTCGGCTGCATT TGAACCGCATCATAATGTGTCGGCTGAAGAACACGAAAGGGTTCTCCTGCAATTCGGGAAAATCGGAAAAGACATTTTCACCATGGACTATAGCTACCCG CATAGGAAATTTCAAGCGTTTGCAATCTGCCTCAGCAGCTTTGACACCAAACCAGCCTGTGAATGA
AA sequence Show only first row Show all	>Lus10026007 pacid=23173152 polypeptide=Lus10026007 locus=Lus10026007.g ID=Lus10026007.BGIv1.0 annot-version=v1.0 MPPFKSIVRELKEMKDGVGSRSRRREVEGKRWRGSRARSHIAPDESSLVENEECSDEQGQWADLPPELLLDIIRRVEETESSWPDRAVVVHCATVCKSWR EVTRDIVKTPEQCGLLTFPISLKQPGPREAPIHCYIRRDPATSTFLLFQGLMPSEGEKDKLLLAARRIRRTTCADFVISLAPNDFSRSSNNYIGRLRSNF LGTKFTILDRQSSHEVPMQLARWTSHKLHSRRGSSRTPASNYAIGTINYELNVLRTRGPRRMHCVINSIPVSSMEEGGSAPTITSLPEAAAGEQFSPSPV SKGKGPGSDVSFTSPSESPMIIPDSGEPLVLKNRAPRWHEQLQCWCLNFKGRVTVASVKNFQLSAAFEPHHNVSAEEHERVLLQFGKIGKDIFTMDYSYP HRKFQAFAICLSSFDTKPACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	0	1
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	3.2	0.7477
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	3.9	0.7922
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	4.5	0.7523
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	12.3	0.7840
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008907 [exp]	15.0	0.6992
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	19.6	0.7421
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	20.6	0.7648
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	23.0	0.6907
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	25.8	0.7419
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	27.5	0.7209

Compare expression of checked genes

Lus10026007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.