Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18300 167 / 3e-49 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36540 161 / 1e-47 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT4G34530 157 / 8e-46 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G26260 152 / 1e-43 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 152 / 3e-43 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 152 / 2e-42 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 149 / 2e-41 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 141 / 2e-40 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 141 / 5e-40 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 142 / 1e-39 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014300 [exp] 474 / 3e-170 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 163 / 3e-48 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 161 / 3e-47 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 149 / 2e-42 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030908 [exp] 155 / 4e-42 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 155 / 5e-42 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013284 [exp] 145 / 6e-42 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030807 [exp] 144 / 2e-41 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10041261 [exp] 143 / 7e-41 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121850 [exp] 201 / 1e-61 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.007G023600 [exp] 188 / 6e-57 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G156000 [exp] 181 / 1e-53 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 176 / 1e-51 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.014G148900 [exp] 155 / 7e-43 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 154 / 9e-43 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G068100 [exp] 145 / 8e-42 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 151 / 9e-42 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 150 / 3e-41 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G146500 [exp] 147 / 3e-41 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026008 pacid=23173115 polypeptide=Lus10026008 locus=Lus10026008.g ID=Lus10026008.BGIv1.0 annot-version=v1.0 ATGCCATCGTCTCAGGAACACACATCTTGCATGGAGGACATGAGTGTATTAGAGAGACAGTCGGCAAGGTTCAAATGGCTTCTGCAGCAGCAACAGCAAT TCAAAGATACTAGCTTTATCATGCCTCCTCAGTTTCATCATCTCCTACTCCCTTCGGGATTCGATTTCCTTTCTCCGGACCAAATAGCGAGCCATCCTGA TCAGTACTGTCTGTCCACAAGTTCAAACAAGAGGAAAACAGAGGTTGGAAGGGGAATGAAGAAGAGAGTCAAAGGAGAAAGGGAGATGGTGGAGTGTTCT AGTGGAACCAGGAGTACTGAAACAGAGAAAAATTGTAAAGATTCAGGAGCTAAGAAATCAGAGTATATTCACGTCCGGGCGCGCAGGGGACAGGCGACTG ATAGCCACAGCTTAGCTGAAAGGGCGAGGAGGGAAAAGATCAGCAGGAAAATGAAGTATCTGCAGGATTTAGTACCTGGCTGCAACAAGATTACTGGAAG GGCAGGGATGTTGGATGAGATCATCAATTATGTTCAGTCCCTCCAGCGCCAGGTTGAGTTCTTGTCAATGAAACTTGCAGCTGTGAGCCCAGGAATGGAG TTCAGCAGCGATAAGCATCCTGGGAAAGAGCTTCAAGCGTACGGGAGTTTTCCAACAGCTATCAGCAGCGTGTTTCCAGGTGCAGCCGCCGGTAGTTTGG CCCAACTCCATCACCTTGAGGCGAGCAGGGAGCTCGAGATTCTGAATAAGAATCACAGCCAACTCTCTTCTTCCCCAGAAGAAACTCCAACATCCTCCAC TTTCATTCCTGAACTCTGTGTCGAATCTTCCTGTTACCCGCAAATCCAAGCACAGCATTTCTGGGAAGCGGACTCTCAGAATTTCCAGGACATGGGTTTC CATCATCAAGGTTGA
AA sequence Show only first row Show all	>Lus10026008 pacid=23173115 polypeptide=Lus10026008 locus=Lus10026008.g ID=Lus10026008.BGIv1.0 annot-version=v1.0 MPSSQEHTSCMEDMSVLERQSARFKWLLQQQQQFKDTSFIMPPQFHHLLLPSGFDFLSPDQIASHPDQYCLSTSSNKRKTEVGRGMKKRVKGEREMVECS SGTRSTETEKNCKDSGAKKSEYIHVRARRGQATDSHSLAERARREKISRKMKYLQDLVPGCNKITGRAGMLDEIINYVQSLQRQVEFLSMKLAAVSPGME FSSDKHPGKELQAYGSFPTAISSVFPGAAAGSLAQLHHLEASRELEILNKNHSQLSSSPEETPTSSTFIPELCVESSCYPQIQAQHFWEADSQNFQDMGF HHQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	0	1
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	1.4	0.9744
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	1.7	0.9727
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	2.0	0.9764
AT3G06070			unknown protein		Lus10034044 [exp]	3.3	0.9549
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	4.0	0.9609
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	4.2	0.9446
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	6.0	0.9584
AT5G23160			unknown protein		Lus10013437 [exp]	6.2	0.9545
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	6.5	0.9541
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	6.5	0.9651

Compare expression of checked genes

Lus10026008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.