Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18350 149 / 1e-43 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G14440 137 / 2e-38 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT4G24660 134 / 2e-38 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G02540 136 / 4e-38 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT5G15210 134 / 7e-38 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT3G50890 129 / 3e-36 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT1G69600 128 / 8e-36 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT3G28920 129 / 1e-35 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G60480 124 / 8e-35 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT5G65410 126 / 9e-35 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014302 [exp] 380 / 1e-133 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10038135 [exp] 135 / 2e-37 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10015900 [exp] 95 / 2e-23 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10007147 [exp] 91 / 7e-21 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10010693 [exp] 86 / 1e-20 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010694 [exp] 87 / 8e-20 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10030679 [exp] 85 / 2e-19 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005244 [exp] 84 / 6e-19 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10037175 [exp] 82 / 7e-19 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024100 [exp] 157 / 3e-46 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G122500 [exp] 151 / 2e-43 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.005G227900 [exp] 149 / 3e-43 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.002G035200 [exp] 144 / 2e-41 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.019G081300 [exp] 136 / 1e-38 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G126500 [exp] 134 / 2e-37 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 134 / 5e-37 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.002G102900 [exp] 131 / 9e-37 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G135100 [exp] 131 / 9e-37 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.012G040900 [exp] 120 / 1e-33 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10026010 pacid=23173213 polypeptide=Lus10026010 locus=Lus10026010.g ID=Lus10026010.BGIv1.0 annot-version=v1.0 ATGGAAGAGGGAGACACGAACGAAACGACGTCGCCCCCCGCCCACACTACAGTAGCTCACCAGCAGCAGCATTCATCATCCGGAGCGAGATCCAGAACTT ATCGCCACCGTTCAATCGATCTTCCTCATGATGCCCACTTCTCACCGTTGGATCTGCAACCAAACGATCCTCAAGAAGAAGATGATCGCAGATCCAGATT ATTGCAGCCTGCCGCCGATGCTTTAACGGTGCAGCAGCAGCAGCTGCCACTTATTATTGTGAGATACAAAGAGTGTATGAAGAATCACGCCCCGTCATCG GGAAGACACGTCGTCGACGGATGCGGCGAGTTTATGCCCCGCTCCGACGACGTCGGCGACTTGAGATGCGCCGCTTGCGACTGCCATCGGAACTTCCACC GACAGGAGATCGACAACCCGCCGCCGTTGATGATGCAGCCCCCTCCTCGGAGAACCACCGCTACTACCATGCACAGATTCCCCCCTCCACCGCCTCCTCC GGTTATAATGATGACCTTTGGCGGCGGAGGAACTAGTATGGGTGCAGAATCTTCGAGCGAGGATCTAGACGATTTGCGGCGGACGGGGGAGTTGTTAGAA CAGTCGAGGACGACGTCGTGTTCGAGGAAGAGACACAGGACCAAGTTTAGCAAGGAGCAGAAGGAGATGATGGCGGATTTCGCGGAGAGGATAGGGTGGA GGATCGACAAAGGAGACGAATCAGAGGTTGACATGTTTTGTTCGCGGATTGGGGTGAAAAGGAAAGTGTTCAAGGTCTGGATGCACAACAACAAGCAGCG GTCAGGGAAACCAAAGCAAATGTAA
AA sequence Show only first row Show all	>Lus10026010 pacid=23173213 polypeptide=Lus10026010 locus=Lus10026010.g ID=Lus10026010.BGIv1.0 annot-version=v1.0 MEEGDTNETTSPPAHTTVAHQQQHSSSGARSRTYRHRSIDLPHDAHFSPLDLQPNDPQEEDDRRSRLLQPAADALTVQQQQLPLIIVRYKECMKNHAPSS GRHVVDGCGEFMPRSDDVGDLRCAACDCHRNFHRQEIDNPPPLMMQPPPRRTTATTMHRFPPPPPPPVIMMTFGGGGTSMGAESSSEDLDDLRRTGELLE QSRTTSCSRKRHRTKFSKEQKEMMADFAERIGWRIDKGDESEVDMFCSRIGVKRKVFKVWMHNNKQRSGKPKQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	2.0	0.9011
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	2.0	0.9112
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	2.4	0.9054
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	5.2	0.8500
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	5.2	0.9038
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	5.5	0.8995
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	6.7	0.8870
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	8.0	0.8973
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	9.5	0.8981
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	10.0	0.8837

Compare expression of checked genes

Lus10026010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.