Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 195 / 4e-57 HXXXD-type acyl-transferase family protein (.1) AT5G47950 169 / 1e-47 HXXXD-type acyl-transferase family protein (.1) AT3G30280 169 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT1G24430 167 / 9e-47 HXXXD-type acyl-transferase family protein (.1) AT4G15390 166 / 4e-46 HXXXD-type acyl-transferase family protein (.1) AT1G24420 159 / 8e-44 HXXXD-type acyl-transferase family protein (.1) AT5G47980 144 / 3e-38 HXXXD-type acyl-transferase family protein (.1) AT5G23970 134 / 1e-34 HXXXD-type acyl-transferase family protein (.1) AT4G15400 117 / 1e-28 HXXXD-type acyl-transferase family protein (.1) AT5G41040 99 / 2e-22 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021387 [exp] 754 / 0 AT3G26040 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) Lus10021392 [exp] 518 / 0 AT3G26040 184 / 6e-53 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 488 / 9e-171 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10021391 [exp] 445 / 1e-153 AT3G26040 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 385 / 1e-130 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 288 / 1e-92 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 271 / 6e-86 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 263 / 4e-85 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 255 / 1e-79 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033500 [exp] 280 / 4e-89 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 271 / 4e-86 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 271 / 5e-86 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 271 / 5e-86 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 270 / 1e-85 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 270 / 1e-85 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 270 / 1e-85 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 270 / 2e-85 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 267 / 9e-85 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 245 / 3e-76 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026013 pacid=23173229 polypeptide=Lus10026013 locus=Lus10026013.g ID=Lus10026013.BGIv1.0 annot-version=v1.0 ATGGAGGTGTCCATTATTTCTGAAGAAAGTGTTAAGCCATCAAATCTTGGAGCCGTAGAGCCTGTGAAACTCAGCCTAATGGACCAACTAAGTCCCACAA ACTACACTCCCACCATACTCTTCTACCAAAACAACAACCACACCCACTTCGAAAACGTAGCGATAGAGCTCAAACGGTCCCTCTCTGAAACCCTATCCGT CTACTATCCCTTGGCCGGTAGAGTCATGGACAACTTCGACATCCGTGACTTCCACCAGGGCGTCCCTTTCATTGAGACCAGCGTGAAGTGCAAGCTGTTT GATTTCCTCCGCAATCAAGGCTTGCACAACGACAGAGTGGAATTACTCAACAACCTCCTCCCCAGACGCGCTGAACGCCTGCTCCCCGACAGTGTCCCGC CGGTGGCAGTCCAGCTCAACGTGTTTGAATGTGGTGGGGTCGCGCTCGGGATGTGCTTTTCGCACAAAACGCTCGATGGAGCCTCGATGAGTTTGTTCTT GAAGGCATGGTCAGAAATCAACCGTGCCAATATAAACCACGACAATAGTATGGTGGTGAGTAGTGGCACTCTTCTACCGGATTTCTCACAAGGCATGTTG ACTTTCCCTCCGGTCAAATCCGTGCCTTCTCACTATGAACCCGTGATAGAAGGGATTTGGTTCGCGAGCAAAGGGAATCCTGTCAAGAGGAGGTTCGTGT TCGATGCTGACTCGATTTCGGAACTCAAATCAAGAGCCAGGAGCGAAACGTTGGAGCATCCAACGACGGCCGGTGCGCTTTCAGCTTTCATTTGGAAGGC CACAATATCGGCATACGCATCATACGGTAACAAAAATTGTTGTGAACCTTCTCTACTGTGTCAAACTGTTAATTTGAGGAAGCCGACAAGGTCGTGCCTG TCGAGAAATTCGTTCGGGAACATGGTTCTCTTCTCGGCTTCGAGATACGACCCGGAAATCGACGGACTTCCGAAGATCGACAGTCTAGCTATACTGGTGA GGGATGAGGTAACGAAAATAAACAGCGAGTATGTGTCGAAAATGAGCGGAAAATACGGTTCACAAGTAGCATTTGACAACCTCGTGAAATCTTATGAAGC TTATGATGGGCAAACAAATGCTTTGGAAATATCTTGTTGGTACGAGTTTGGGCTTAGTAAGCTGGATTTTGGATGGGGCCCTACTGTTTGGGTTGGGCTG AGTGGGCCGGGTGCTTCGGGGAAAGAAGATGACGGCGTCAAGTATTTGACGGATACTGTGGTTTTGCTGGAGAACAATAAGGGTGGAATTGAGGCATGGT TCACTTTGGAGGAACCAGGGGTAATGAAGGCATTGGAAAATGATCCCGAGTTTTTGGAATTTGCTTCCACAAAATTCGAGATCGTGCCATAA
AA sequence Show only first row Show all	>Lus10026013 pacid=23173229 polypeptide=Lus10026013 locus=Lus10026013.g ID=Lus10026013.BGIv1.0 annot-version=v1.0 MEVSIISEESVKPSNLGAVEPVKLSLMDQLSPTNYTPTILFYQNNNHTHFENVAIELKRSLSETLSVYYPLAGRVMDNFDIRDFHQGVPFIETSVKCKLF DFLRNQGLHNDRVELLNNLLPRRAERLLPDSVPPVAVQLNVFECGGVALGMCFSHKTLDGASMSLFLKAWSEINRANINHDNSMVVSSGTLLPDFSQGML TFPPVKSVPSHYEPVIEGIWFASKGNPVKRRFVFDADSISELKSRARSETLEHPTTAGALSAFIWKATISAYASYGNKNCCEPSLLCQTVNLRKPTRSCL SRNSFGNMVLFSASRYDPEIDGLPKIDSLAILVRDEVTKINSEYVSKMSGKYGSQVAFDNLVKSYEAYDGQTNALEISCWYEFGLSKLDFGWGPTVWVGL SGPGASGKEDDGVKYLTDTVVLLENNKGGIEAWFTLEEPGVMKALENDPEFLEFASTKFEIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	2.6	0.9265
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	3.5	0.8751
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	10.6	0.8962
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10030800 [exp]	15.2	0.8531
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	20.8	0.7670
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005116 [exp]	21.4	0.7479
AT3G28880			Ankyrin repeat family protein ...		Lus10005246 [exp]	23.3	0.8665
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	25.2	0.8573
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	29.9	0.8675
					Lus10010102 [exp]	31.7	0.8118

Compare expression of checked genes

Lus10026013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.