Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63810 1263 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014305 [exp] 1986 / 0 AT1G63810 1318 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024600 [exp] 1464 / 0 AT1G63810 1399 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF03813 [flax] [poplar] Nrap Nrap protein domain 1
Representative CDS sequence Show only first row Show all	>Lus10026014 pacid=23173256 polypeptide=Lus10026014 locus=Lus10026014.g ID=Lus10026014.BGIv1.0 annot-version=v1.0 ATGGCGACGATCACGCTGCCGGATCCAATGAGCCTGAAGATCTCTGAGCTCTTAAAGGAAGTTCATCTCCAGAACTCGTCTTCCTTCACCAAGCTCGTTG AAGGCATCGTTTCCGCCATCAGAGAATCAATCGAACAAATCCCGGAGGACTTCACGGTTACTGCGAAGGAAGCTCGAGGATTCGTTCGGGATATTGGCGC TGACAAGGCCGAGTTTAAGTTTAAGAGGCCGAGTCAACTGGAAGTCGGCGGAAGTTATTCGATAAATTGCATGGCGAGACCTGAAACTAATGTGGACCTT CTCTTGCGGCTTCCAAAGGAGTGCTTCAATGAGAAAGATTACTTAAATCACAGGTATCATGCCAAACGGTTCCTTTACCTTTGTATCATTAAGAAGTTCT TGAAGTCTTCTTCATCAATCTCCAAGGTTGAGTGGTCCACCTTCCAGAATGAGGCTCGAAAACCTGTACTTGTGGTCTATCCAGCCGCCAACGCCCCAGA ATTTCCTGGGTTCTTTGTACGGATAATTCCTACTGCAAAGTCTTTGTTCAATGTTTCGAAGTTGGCCTTAAGAAGGAATAACATCAGAGCTCTTCAAGAT GGGAACACTCCTCTTCCTTCTCCAAAATATAATACCAGTATTTTGGAGGACATGAGTTTGGAAGAGAACAATGAATTTCTCAGAGACACTTTCACTGGGT GGAATGAACTAGGAGAAACTCTGATTCTGCTGAAGGTGTGGGCTCGACATAGAAGTTCTGTGTACGTTCATGATGGAGTAAATGGATTCCTGCTGGCTAT TATACTGTCGTACCTAGCAACCCATGCAAAGGTTAATAAATCTATGAGGCCACTGCACATGTTTCGTGTTACATTGGATTTTATAGGTAATTCAAACCTA TGGAGCAAAGGGCTCTATTTTCGGAAGCATTGTGATATTAAGTTATCAAAAGAGGACAGGATGATTTACAGAGAGTCGTTTCCTGTTGTTCTATGTGATC CACGAATCCCTGTCAATTTAACTTACCGGATAAGCAGAATTGCTTTCTCCGAGCTTCGAGAAGAAGCGGCACTTACTCTTCAATGCTTAGGAAAAGTCGG AGATGGGGCCTTTGAGGATATCTTTACCACCAATGTTGATTTTCCTTCTAGATATGATCATTGTATAAGGTTAAATTTAAATGGAAACAGTGAAGTATTT TCTTCTGGGTTTTGTTTGGACGATGAATGTTGGAGATTGTATGAGCAGAAGGTGCATGATATTCTCAGTCAGGGTTTGGGAGATAGGGCAAAGTCTATTC GTGTTATTTGGAGAAATCTCTCTTCGGGATGCAGATTGGAGAAGGGTTTGTCTACTCTCGACAGAGAACCATTGATTATAGGAGTTTCTGTTAGCTCATT GGAGGAAGCATTCAGAGTTGTCGATATTGGCCCGAATGCTGAAGACAAGGATGGGGCTCTTAAATTCAGAAAGTTCTGGGGTGAAAAAGCAGAGCTTCGA AGGTTCAAAGATGGTAGAATTGCTGAAAGTACAGTATGGGAAACAAAGCAGTGGACAAAGCATCTAATTCTGAAAAGGATAGTCGAACATGTGCTTGTTC GACATCTTTCTATATCGGCAACAAATATTACTCAAATTGTGGATCAGCTAGATTTTTCTTTGCTTCATGGTGCTGCAGATCCAATATCATTCTTCCCGGA TTTGTGTGGGGCATTTGATGTTCTGGAAAAGCGACTTCGTCTGATTGAAGACATTCCTTTGAAGATATCCCATGTGCAATCATTAGACCCAGCATTGAGA GCCACTTCTGTCTTTCCTCCTGAGCCACATCCACTCGCTATTGAAAAGGGAACCACTGGAAAATTGAGTAAACACACTCCATCATGCATTCAGCCTCTTG AAGTGATGATTCAGTTGGAAGGTTCTGCAAATTGGCCTAGGGATGAAATTGCAATTGAGAAAACCAAATCTGCCTTCCTTCTTAAAATTGGGGAAAGTTT GCAGAGTAACTGGAAGATGACTTGCAATGCGACCGAAAATGATGTGGTGGTTTTTCTTAAAGGATATGCATTCCGCCTCAATATTTTGCATGACAGAGCC CTAACCTTGGTCAATAGTGGAAGTGGAAGTCAACGAGCCAAGCTAGTGTTTAGTACAGACAAGAGACTGTTTCTTCAAAGTCAGCATTCAAGTACAATTA ACGCCGTACAGCGTGTTCATCCAGTTTATGGTCCAGTTGTTAGGCTTGCAAAGAGATGGGTTGCTGCTCATTTATTTTCAGCTTGCTTGACAGATGAGGC AGTAGAATTATTGGTGGCACATCTTTTTGTAAATCCATTACCCTTTAAGGCACCTTGTTCTCGCCTCACTGGCCTCTTAAGGTTCTTGCGATTACTAGCA GAGTATGACTGGAACTTTTCTGCATTGGTTGTTGACATAAACAATGACTTGAGCCCAAGTGATAAGGAGGAGATTGAAAAAAACTTTTCATCGAGTAGAA AGGGTTACGAGGGAAACTTGCAAAATGTCAGCCCAGCGATGTTCTTAGCCACACCATATGATAAAGCATCTGAAGCGTGGACTGCGTCTCCAAGTTCAGT GGAGCTGAAGAGACTTGTAGCTTATGCTCGTAGCAGCGCAGCTTTGCTGACCAGACTCGTTTTACAAGATGAAACTGATTCATTAAGATGGGAGTGCCTT CTTCGAACCCCTTTCAACAACTACGATGCAGTGATTCTTCTTCATGTCAATAAGTTACCATTCCCTCGCCACCTCCTCTTCCCATCAGCAGTGAATCATG GGAGGATCATTGCTCGTGGCAATGCTACTAAGTCTTTTGGGCCGTTCTTTACTGCTGAAGATTTCAAAGGGAACTTACAGCACCTGAAAGATAAGCTACT GATTGACTTCAATCCGTTACGATGCTACGTTACTGATCTAAAGGCAAGCAGCATCATTTCAAGTTTGGGATTTAACCTTTTTAACAAACTACTCAAGTTC AGTACCGTCAAGTTGTGGTATGATGCTCTAGGTGGGGACGCCATTGGACTAACATGGGAAAGATCTGGATCAAAGAAACGTTTACGGGATGATAAGAATG ACGAGGAGGAAGAAGGAGATGATCCGGTGAATATATTGAAGGCAGTTGGTGAAGCTGGTAAAGGGTTTGTGAAAAGCGTACATCTAGTCAAAGTTCGAAG GGTCACGGCTTAG
AA sequence Show only first row Show all	>Lus10026014 pacid=23173256 polypeptide=Lus10026014 locus=Lus10026014.g ID=Lus10026014.BGIv1.0 annot-version=v1.0 MATITLPDPMSLKISELLKEVHLQNSSSFTKLVEGIVSAIRESIEQIPEDFTVTAKEARGFVRDIGADKAEFKFKRPSQLEVGGSYSINCMARPETNVDL LLRLPKECFNEKDYLNHRYHAKRFLYLCIIKKFLKSSSSISKVEWSTFQNEARKPVLVVYPAANAPEFPGFFVRIIPTAKSLFNVSKLALRRNNIRALQD GNTPLPSPKYNTSILEDMSLEENNEFLRDTFTGWNELGETLILLKVWARHRSSVYVHDGVNGFLLAIILSYLATHAKVNKSMRPLHMFRVTLDFIGNSNL WSKGLYFRKHCDIKLSKEDRMIYRESFPVVLCDPRIPVNLTYRISRIAFSELREEAALTLQCLGKVGDGAFEDIFTTNVDFPSRYDHCIRLNLNGNSEVF SSGFCLDDECWRLYEQKVHDILSQGLGDRAKSIRVIWRNLSSGCRLEKGLSTLDREPLIIGVSVSSLEEAFRVVDIGPNAEDKDGALKFRKFWGEKAELR RFKDGRIAESTVWETKQWTKHLILKRIVEHVLVRHLSISATNITQIVDQLDFSLLHGAADPISFFPDLCGAFDVLEKRLRLIEDIPLKISHVQSLDPALR ATSVFPPEPHPLAIEKGTTGKLSKHTPSCIQPLEVMIQLEGSANWPRDEIAIEKTKSAFLLKIGESLQSNWKMTCNATENDVVVFLKGYAFRLNILHDRA LTLVNSGSGSQRAKLVFSTDKRLFLQSQHSSTINAVQRVHPVYGPVVRLAKRWVAAHLFSACLTDEAVELLVAHLFVNPLPFKAPCSRLTGLLRFLRLLA EYDWNFSALVVDINNDLSPSDKEEIEKNFSSSRKGYEGNLQNVSPAMFLATPYDKASEAWTASPSSVELKRLVAYARSSAALLTRLVLQDETDSLRWECL LRTPFNNYDAVILLHVNKLPFPRHLLFPSAVNHGRIIARGNATKSFGPFFTAEDFKGNLQHLKDKLLIDFNPLRCYVTDLKASSIISSLGFNLFNKLLKF STVKLWYDALGGDAIGLTWERSGSKKRLRDDKNDEEEEGDDPVNILKAVGEAGKGFVKSVHLVKVRRVTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63810			unknown protein		Lus10026014 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	1.0	0.9750
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	1.4	0.9719
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	2.4	0.9624
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	2.6	0.9531
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	4.2	0.9575
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	4.9	0.9596
AT1G69070			unknown protein		Lus10019174 [exp]	5.0	0.9579
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	6.3	0.9516
AT2G37690			phosphoribosylaminoimidazole c...		Lus10022004 [exp]	6.5	0.9248
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	7.2	0.9350

Compare expression of checked genes

Lus10026014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.