Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49555 457 / 4e-157 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G16310 44 / 0.0004 LDL3 LSD1-like 3 (.1) AT1G57770 43 / 0.0005 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014308 [exp] 586 / 0 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10041743 [exp] 579 / 0 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 475 / 1e-165 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10037348 [exp] 50 / 5e-06 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025300 [exp] 454 / 1e-155 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.003G005800 [exp] 50 / 4e-06 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10026016 pacid=23173118 polypeptide=Lus10026016 locus=Lus10026016.g ID=Lus10026016.BGIv1.0 annot-version=v1.0 ATGTGGAAGAAATGCTTAACAACAGCGACATCCTCGGAATCGACATCACTTCAGACTCTCAAGGAGAAGAAATGGGACGCGGTAGTGATTGGCGGCGGGC ACAACGGGTTAACTGCAGCCGCCTACCTCGCCCGAGGTGGTCTCTCCGTTGCCGTACTTGAGCGCCGCCACTTGGTCGGCGGCACCACCGTTACCGAAGA GATTATTCCTGGCTTCAAGTTCTCCCGTTGCAGCTACCTCCAAAGTCTGCTTCGCCCCGCCGTCATCAAAGAGCTGGAACTGGAGAGGCATGGACTGAAG ATGTTGAAAGGGAGTTCATTCTCCTTCACGCCTTGCGTCGGTGGCCGTTACCTTCTGCTGGGAGCCGATGAACACCAAGACCTCGTCGAGATCTCCAAGT TCTCGAAACGAGACGCAGAGGCTTATCCCATGGACTTCGCGGAGCTGCTGGTATCTCCGGCTTCGAAGGTTTTGCATAAGTGGTTCGAGATAGACATTCT GAAGGCATCACTTGGAATGGATTCTATCATAGGCAGCACGGGGAGCCCTGGTACGCCAGGGAGTGGATATGTGTTGCTACACCACGTGATGGGAGATTCA GATGGGGATCGTAATGTTTGGTCGATATTTTCTGCAATATGTAAGCAAGTCGAAGGTGGGATGGGCTCGATATCGTCTTCTATTCGGAGCGCTGCTGTTG AAGCCGGTGCCCAAGTCTTCACAAATGCAGAGGTTTCAGAAATATTAGTGAATGATTCCGGAGCTGCTAGCGGGGAAATGTTGCCAAGTGATGTTCTGCC TGCTGATTTCACCACTTCTTTGAAGAACACAGACTATAGTTCTGCGACCACGAAGATAAACGTAGCGGTGGACAAGCTGCCCCAGTTTTCGTGTCGTGGT GGTTCTGATGCTGTAGGTACCCACCACATGGGGACGACTCGTATCGGTGCAGATAGTCTGGAGGCGATTGAAAAGGCATGTCAAGATGCCGAAAATGGTT TACCATCACAAAGGCCAGCTATGGAGATGACAATTCCTTCTGTTCTGGACACAACTATTTCGCCCCCCGGTAAACATGTGGCTGGATTGTTCACTCAGTA CACACCTTATAAGCCGTCTGATGGGAGTTGGGATGATCCCACTTACCGAGAAACGTATGCACAAAGATGTTTTAGCCTGATTGACGAGTACGCACCTGGA TTCAGCTCGTCGGTTATTGGGTACGACATGACTCCACTCGATCTGGAGCGCGAAATCGGACTCACAGGGGGGAACATCTTCCATGGTGCGATGGGATTGG ACTCGCTCTTCCTCATGCGACCGGTAAAAGGATGGTCGCATTATAAGACACCGATACGAGGACTGTACTTGTGCGGAAGCGGGGCTCATCCAGGTGGGGG TGTAATGGGTGCTCCTGGCCGTAATTCTGCATTTGTTGTTCTTCAGGATTTCAACAAATCAACCTGA
AA sequence Show only first row Show all	>Lus10026016 pacid=23173118 polypeptide=Lus10026016 locus=Lus10026016.g ID=Lus10026016.BGIv1.0 annot-version=v1.0 MWKKCLTTATSSESTSLQTLKEKKWDAVVIGGGHNGLTAAAYLARGGLSVAVLERRHLVGGTTVTEEIIPGFKFSRCSYLQSLLRPAVIKELELERHGLK MLKGSSFSFTPCVGGRYLLLGADEHQDLVEISKFSKRDAEAYPMDFAELLVSPASKVLHKWFEIDILKASLGMDSIIGSTGSPGTPGSGYVLLHHVMGDS DGDRNVWSIFSAICKQVEGGMGSISSSIRSAAVEAGAQVFTNAEVSEILVNDSGAASGEMLPSDVLPADFTTSLKNTDYSSATTKINVAVDKLPQFSCRG GSDAVGTHHMGTTRIGADSLEAIEKACQDAENGLPSQRPAMEMTIPSVLDTTISPPGKHVAGLFTQYTPYKPSDGSWDDPTYRETYAQRCFSLIDEYAPG FSSSVIGYDMTPLDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSHYKTPIRGLYLCGSGAHPGGGVMGAPGRNSAFVVLQDFNKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10026016 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035294 [exp]	10.4	0.6261
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	11.0	0.6257
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10018173 [exp]	24.1	0.5559
AT5G48540			receptor-like protein kinase-r...		Lus10014362 [exp]	81.1	0.5694
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10042747 [exp]	196.6	0.5444
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	217.9	0.5396
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	266.4	0.5329

Compare expression of checked genes

Lus10026016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.