Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49560 149 / 1e-45 Putative methyltransferase family protein (.1) AT3G50850 127 / 2e-37 Putative methyltransferase family protein (.1) AT1G08125 51 / 2e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014309 [exp] 223 / 2e-74 AT5G49560 283 / 1e-95 Putative methyltransferase family protein (.1) Lus10021425 [exp] 53 / 6e-09 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10016141 [exp] 49 / 1e-07 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025600 [exp] 140 / 3e-42 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026017 pacid=23173239 polypeptide=Lus10026017 locus=Lus10026017.g ID=Lus10026017.BGIv1.0 annot-version=v1.0 ATGGTGAGGGACGGAGGAGGATCCGTCCACGTGGCGCCGCTGAGGTGGGGGGAGGAGGACGACGTGGATCGCGTGGGTCGAGGGTACTTTGATCTGGTGG TTGCGTCTGACGTGGTTTATCACGATCACCTGTATGATCCTCTGCTCAAAACGCTGCGTTTCTTGCTGCTGCAGGGAGAAGGTAGGAAGACGGCGTTTGT GATGGCGCATTTGAGGAGGTGGAAAAAGGAAGCCACGTTCTTCAAGAGGGCTAGGAAATCGTTTGATGTTGAAGTACTCTACGTCGACAGTCCTACCGAC GGCCGGAGGCTCGGCGTTACAGTTTACCGTTTCGTTGCCAAAGGGAAGAAAATGGCTGCAACTGCTGCACAAGTTTGA
AA sequence Show only first row Show all	>Lus10026017 pacid=23173239 polypeptide=Lus10026017 locus=Lus10026017.g ID=Lus10026017.BGIv1.0 annot-version=v1.0 MVRDGGGSVHVAPLRWGEEDDVDRVGRGYFDLVVASDVVYHDHLYDPLLKTLRFLLLQGEGRKTAFVMAHLRRWKKEATFFKRARKSFDVEVLYVDSPTD GRRLGVTVYRFVAKGKKMAATAAQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	0	1
AT5G20600			unknown protein		Lus10011961 [exp]	6.2	0.8654
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	7.9	0.8409
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	15.0	0.8563
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	16.5	0.8337
AT5G64520		ATXRCC2, XRCC2	homolog of X-ray repair cross ...		Lus10021426 [exp]	19.1	0.7854
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	20.6	0.8476
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	24.5	0.8420
AT4G37190			unknown protein		Lus10001001 [exp]	30.8	0.8339
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	31.6	0.8463
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Lus10012932 [exp]	31.7	0.8139

Compare expression of checked genes

Lus10026017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.