Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36630 1254 / 0 EMB2754 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014310 [exp] 1741 / 0 AT4G36630 1352 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123000 [exp] 1402 / 0 AT4G36630 1382 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Potri.007G025700 [exp] 1379 / 0 AT4G36630 1380 / 0.0 EMBRYO DEFECTIVE 2754, Vacuolar sorting protein 39 (.1) Potri.003G148700 [exp] 47 / 8e-05 AT1G22860 1144 / 0.0 Vacuolar sorting protein 39 (.1) Potri.001G081900 [exp] 45 / 0.0004 AT1G22860 1120 / 0.0 Vacuolar sorting protein 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10367 [flax] [poplar] Vps39_2 Vacuolar sorting protein 39 domain 2 CL0020 [flax] [poplar] TPR PF10366 [flax] [poplar] Vps39_1 Vacuolar sorting protein 39 domain 1 CL0020 [flax] [poplar] PF00780 [flax] [poplar] CNH CNH domain CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10026018 pacid=23173251 polypeptide=Lus10026018 locus=Lus10026018.g ID=Lus10026018.BGIv1.0 annot-version=v1.0 ATGGTACACACTGCATATGATTCCTTTGAGCTACTCCGCGGCTGTCCTACGAAAATCGATGCCGTCGCATCATATGCTTCAAAGCTCCTCCTCGCTTGTT CCGATGGAGCTCTGCGAGTCTACGCCGCGGAATCCGACCGATCTCCGTCCACGGATTACCTGGGCCAAGCTCAAGAGCTTCGTAAGGAGGCCTATGTACT GGAGAGGACAGTCACCGGTTTTTCCAAGAAGAACCTCTTGTCTATGGAGGTTTTGGCGTCTCGAGAGCTGCTTGTCTCGCTTTCTGAGTCGATCGCATTC CACAGGCTCCCTAATTTGGAGACTTTTGCAGTGATCACCAAGGCCAAAGGTGCCAATGTTTACTCTTGGGATGATAGAAGAGGATATCTATGCTTCGCAA GGCAAAAGCGAGTTTACATAATCCGCCACGACGGACGAGGATTCGTGGAGGTGAAAGAATTTGGAGTTCCTGATAGTGTGAAATCAATGTCCTGGTGTGG CGAAAACATATGTATTGGGATTAAGAAGGAGTACGTGATACTGAACGCCACCAGCGGTGCATTGAGTGAGGTGTTTCCTTCTGGTCGACTTGCTCCACCT CTGGTTGTCTCTCTTCCCTCCGGGGAACTTCTGCTTGGAAAGATACGATCTCTTCGAGTTCCATATCCAATGATTCAGACCATTGTTCTTCAGAATGTTC GTCGTCTCGTTCAGAGCAATAATGCAGTTATTGTTGCATTGGACAATTCTGTGCATGGGCTCTTCCCTGTTCCTGTTGGTGCACAGATCGTGCAATTAAC AGCATCTGGAAATTTTGAAGAAGCTTTGGCATTGTGCAAGCTACTTCCTCCAGAAGATGCAAGCCTTCGTGCTGCAAAGGAGGGATCTATTCACATAAGA TATGCTCATCATCTTTTCGATAATGGTAGTTATGAGGAGGCCATGGAGCACTTTTTAGCTTCACAAGTAGAAATCACATATGTACTTTCTATGTATCCAT CAATAATTCTTCCCAAAACAACTTTGATTCTGGAATCGGACAAGCTAGTCGATGGTTCTCCAGATGCTGTACAGTTATCAAGAGGTTCTTCTGGTGCATC AGATGATCTTGATCCCTCATCTGTATCACAGTTAGCGGAATTTGATGAGCATTCAGCATTAGAATCCAAGAAGATGATCCATAATACTCTAATGGCTCTC GTTAAGTACTTACAGAAACGGAGATACAGCATCATCGAAAAAGCAACTGCTGAAGGAACAGAGGAGGTTGTTTTAGGTGCCGTCGGGGATAATTATGGAC ATTATGACTCCAGTAGGGGACGTGGTAATGTTTCCATTAACTCAGGTGCTAGGGAAATGGCAGGAATTCTTGATACAGCCCTCCTCCAAGCACTTCTCCT TACTGGACAGTCCTCAGCTTCTCTAGAATTACTTAGAGGTCACAACTATTGCGATCTGAAAATTTGTGAGGAGAGTCTTCAGAAAAGGAATCATTTTTCT GCTTTGCTCGAGCTATATAGGAGCAATTCAATGCACCGTGAAGCTCTAAAGCTTTTGCATCAATTAGTTGAAGAATCAAGCTCGGGTCGGTCTAAGATTA TTCATAAGTTCAAGCCTGAGGATATTCTAGAGTATCTCAAGCTTCTTTGTGGAACCGATCCAATGCTTGTTCTGGAGTCCTCAATGCTCATTCTTGAAAG GTGTCCAACACAAACTATCGAGTTGTTTCTATCCGGGAACATACCTGCTGATCTGGTCAACTCTTATTTGAAGCAGCATGCCCCAAACATGCAGGGAAGA TATCTAGAACTTATGCTTGCAATGAATGACAGTGCCATATCTGGAAACCTACAAAATGAAATGTTACAAATCTATCTTTCTGATGTTCTTGATTTGTACG CGGAATTGAGTGGCCAACGAAAATGGGACGAGAAGGCTTATTCCCCAGCAAGGAAAAAGTTATTATCTGCTCTAGAAGGTATCTCAGGATATAATCCTGA GACTTTGTTCAAGCGTCTTCCTCCTGATGCATTGTGTGAAGAACGTGCAATTTTATTGGGGAAGATGAACCAGCATGAACTTGCCCTGTCTCTCTATGTC CATAAGCTTCATCTGCCTGATCTGGCATTATCCTACTGTGATCGTGTTTACGAGTCTGCAAATCCAACCAAGTCTGGCAGTATATACCTCACACTACTAC AAATTTATCTGAATCCCAATAAGACAACCAAGAACTTTGAGAAGAGAATCACCAATATAGTAGCTTCTCGAAGCACAAGCATTCCTAAGGCCAGTTCTGC GAGCAGTATTAAGACTAAAGGAGGCCGCGGAGCAAAGAAAATTGCTGCAATAGAAGGTGCAGAAGATGTACGCTTGAGTCCGAGTGGCACCGATAGCAGC AGGAGTGATGGTGATACAGACGAAATAACTGAGGAAGGCAGTTCTACTATTATGCATGATGAAGTGCTTGATCTGTTGGCCAAAAGGTGGGATAGAATAA ATGGAGCCCAAGCCCTGAGGCTTTTACCCAGGCATACTAACTTACAGAACTTGCTTCCATTTCTCGGCCCTCTTCTGAGGAAATCCAGTGAAGCATACAG AAATCTTTCAGTAATCAAGAGTTTGAGACAGAGTGAGAATTTGCAGGTGAAAGATGAATTATACAAACACAGAAAGCCAGTGGTGAAGATCACCGGTGAC AGTATGTGCTCCCTCTGCAACAAGAAGATCGGAACAAGCGTGTTTGCAGTCTATCCCAACGGGAAAACACTCGTCCATTTCGTCTGCTTTAGGGACTCCC AAAGCATGAAGGCCGTTGGTAAGGGCGCACAATCACTGAGGAAGTAG
AA sequence Show only first row Show all	>Lus10026018 pacid=23173251 polypeptide=Lus10026018 locus=Lus10026018.g ID=Lus10026018.BGIv1.0 annot-version=v1.0 MVHTAYDSFELLRGCPTKIDAVASYASKLLLACSDGALRVYAAESDRSPSTDYLGQAQELRKEAYVLERTVTGFSKKNLLSMEVLASRELLVSLSESIAF HRLPNLETFAVITKAKGANVYSWDDRRGYLCFARQKRVYIIRHDGRGFVEVKEFGVPDSVKSMSWCGENICIGIKKEYVILNATSGALSEVFPSGRLAPP LVVSLPSGELLLGKIRSLRVPYPMIQTIVLQNVRRLVQSNNAVIVALDNSVHGLFPVPVGAQIVQLTASGNFEEALALCKLLPPEDASLRAAKEGSIHIR YAHHLFDNGSYEEAMEHFLASQVEITYVLSMYPSIILPKTTLILESDKLVDGSPDAVQLSRGSSGASDDLDPSSVSQLAEFDEHSALESKKMIHNTLMAL VKYLQKRRYSIIEKATAEGTEEVVLGAVGDNYGHYDSSRGRGNVSINSGAREMAGILDTALLQALLLTGQSSASLELLRGHNYCDLKICEESLQKRNHFS ALLELYRSNSMHREALKLLHQLVEESSSGRSKIIHKFKPEDILEYLKLLCGTDPMLVLESSMLILERCPTQTIELFLSGNIPADLVNSYLKQHAPNMQGR YLELMLAMNDSAISGNLQNEMLQIYLSDVLDLYAELSGQRKWDEKAYSPARKKLLSALEGISGYNPETLFKRLPPDALCEERAILLGKMNQHELALSLYV HKLHLPDLALSYCDRVYESANPTKSGSIYLTLLQIYLNPNKTTKNFEKRITNIVASRSTSIPKASSASSIKTKGGRGAKKIAAIEGAEDVRLSPSGTDSS RSDGDTDEITEEGSSTIMHDEVLDLLAKRWDRINGAQALRLLPRHTNLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYKHRKPVVKITGD SMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVGKGAQSLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	0	1
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	4.2	0.8719
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	5.0	0.8839
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	6.0	0.8818
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	7.7	0.8867
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	7.7	0.8934
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	8.9	0.8468
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	12.6	0.8448
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	14.9	0.8298
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	15.2	0.8903
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	15.7	0.8571

Compare expression of checked genes

Lus10026018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.