Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50845 232 / 1e-79 Protein of unknown function (DUF59) (.1) AT1G68310 179 / 2e-58 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G09380 124 / 6e-37 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014311 [exp] 293 / 1e-103 AT3G50845 253 / 1e-87 Protein of unknown function (DUF59) (.1) Lus10031006 [exp] 173 / 3e-56 AT1G68310 233 / 1e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035403 [exp] 172 / 1e-55 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035404 [exp] 135 / 1e-40 AT1G68310 199 / 8e-66 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10031007 [exp] 62 / 5e-13 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123100 [exp] 275 / 1e-96 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1) Potri.001G135800 [exp] 190 / 7e-63 AT1G68310 243 / 8e-84 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.003G098000 [exp] 182 / 6e-60 AT1G68310 257 / 2e-89 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Lus10026019 pacid=23173111 polypeptide=Lus10026019 locus=Lus10026019.g ID=Lus10026019.BGIv1.0 annot-version=v1.0 ATGACTCTGGGTCTGATCAATGCGAATCCAATCGTCCACGCCAAAAAGGAAAGGATCGCCCGATGCGAAGATCCCCACTGCGACGATGCTGCTGTGGATC CGCTCGATATCTATGATTTCGTGAGGGACATAAGAGATCCTGAGCATCCTTATTCCCTGGAGCAGCTCAGTGTTCTTTCCGAGGAATCCATTACTGTTGA TGACAAGCTCGGTCGCATCCTGATTACATTCACTCCTACTATTCAGCATTGTAGCATGGCCACTGTAATTGGTCTATGCCTCCGAGTCAAGCTGCAGGAA TGTTTTCCTCCTCATTACAAGGTTGACATAAAAGTTTCTCCTGGATCTCATGCCAATGAGGAAGCAGTCAACAAGCAGTTGAATGACAAGGAAAGAGTTG CTGCTGCTTTGGAGAACCCCAATCTCCGCCAGCTCGTCGATGAGTGTCTCTACTCCAATGAACTCTGA
AA sequence Show only first row Show all	>Lus10026019 pacid=23173111 polypeptide=Lus10026019 locus=Lus10026019.g ID=Lus10026019.BGIv1.0 annot-version=v1.0 MTLGLINANPIVHAKKERIARCEDPHCDDAAVDPLDIYDFVRDIRDPEHPYSLEQLSVLSEESITVDDKLGRILITFTPTIQHCSMATVIGLCLRVKLQE CFPPHYKVDIKVSPGSHANEEAVNKQLNDKERVAAALENPNLRQLVDECLYSNEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	0	1
					Lus10011653 [exp]	2.4	0.9686
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	3.0	0.9718
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	4.2	0.9631
					Lus10032742 [exp]	4.9	0.9628
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	6.7	0.9615
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	8.5	0.9576
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	14.0	0.9600
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	14.1	0.9591
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	14.5	0.9512
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	14.9	0.9568

Compare expression of checked genes

Lus10026019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.