Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 396 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 375 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 285 / 8e-95 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 254 / 1e-82 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 82 / 1e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 78 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 77 / 2e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 71 / 6e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 64 / 4e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 60 / 8e-10 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014312 [exp] 606 / 0 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 388 / 8e-136 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 382 / 1e-133 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 359 / 1e-124 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 268 / 3e-87 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 264 / 2e-86 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 168 / 2e-50 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 105 / 3e-26 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 100 / 2e-24 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025800 [exp] 457 / 8e-163 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 454 / 9e-162 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 433 / 2e-153 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 397 / 2e-139 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 278 / 1e-91 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 276 / 2e-90 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G168100 [exp] 108 / 1e-27 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 91 / 1e-20 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 88 / 5e-20 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 84 / 2e-18 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10026020 pacid=23173092 polypeptide=Lus10026020 locus=Lus10026020.g ID=Lus10026020.BGIv1.0 annot-version=v1.0 ATGGAAGCCATTGATGCCACTCCTCTGTCCCGACATCTCACACCACCAAACAAACCTTCATACGTTAGCTTCATTTTATACCTGGCCTCACCGCATCGCA AAAACGCCGACAGATCGAAGCGATCATACCTAGCTAGCTCTTTCTCCGCCTCTTCTTACACGCTTCAGATCAAATTCAGAGCAGGGCCAGTCATGTTTCT GCGTAAGAAGCAGCAGAATGGTCAGGAGACTGATCTTGCTCAGCGAGATGTTAAGGTGAATGAGCTCAGGGCGTCTTTAGGACCATTATCAGGGAGGGGT TTGAAGTATTGTAGCGAGGGATGCCTGCGGAGATACTTGGAAGCTAGGAACTGGAATGTTGACAAAGCAAGAAAAATGCTGGAAGAAACTCTCAAGTGGA GAGCTACATATAAGCCTGAAGAAACCCGCTGGCATGAAATAGCACACGAAGGAGAGACGGGCAAAGTCTTCCGAGCCAATTTTCGAGATCGAGCTGGGAG AACTGTACTCATCATGAGGCCCGGGATGCAGAACACCAACTGCGCAGAGGGAAATATCCGGCATTTGGTGTATCTTATCGAGAACACGATTCTCAACCTT CCCGAGGGGCAAGAGCAGATGTCTTGGTTGATAGACTTCACTGGATTTTCCATGAGCACAAGTGTTTCGATCAGGACTGCTCGTGAAATCATCAACATCT TGCAGAATCACTACCCGGAGAGGCTAGCCATTGCGTTCCTATATAGTCCTCCCAAAATTTTTGAAGCGTTCTCTAAGGCTGTAAAATATTTCATGGATCC GAAAACTACTCATAAGGTCAAGTTTGTGTACCCTAACAAGAAAGAAAGCGTGGAGCTCATGTGCTCCCTCTTCGACGAGGAGAATCTCCCTAAAGAGTTC GGTGGGAAAGAAGCCTCGTTGCAGTACAACCACGAGGAGTTTTCTCAGTTAATGGCTCAAGACGACGAAAGAACTGCAAATTTCTGGGGATCGGACGAGA AACCAATCAGCATTTCCAGCAGCCTTGCAGGGAATCAGGTCGCCCCTGAGCCAATGCCTCTTGCTCAACCAGCAAACTAG
AA sequence Show only first row Show all	>Lus10026020 pacid=23173092 polypeptide=Lus10026020 locus=Lus10026020.g ID=Lus10026020.BGIv1.0 annot-version=v1.0 MEAIDATPLSRHLTPPNKPSYVSFILYLASPHRKNADRSKRSYLASSFSASSYTLQIKFRAGPVMFLRKKQQNGQETDLAQRDVKVNELRASLGPLSGRG LKYCSEGCLRRYLEARNWNVDKARKMLEETLKWRATYKPEETRWHEIAHEGETGKVFRANFRDRAGRTVLIMRPGMQNTNCAEGNIRHLVYLIENTILNL PEGQEQMSWLIDFTGFSMSTSVSIRTAREIINILQNHYPERLAIAFLYSPPKIFEAFSKAVKYFMDPKTTHKVKFVYPNKKESVELMCSLFDEENLPKEF GGKEASLQYNHEEFSQLMAQDDERTANFWGSDEKPISISSSLAGNQVAPEPMPLAQPAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	0	1
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10012996 [exp]	3.2	0.9036
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	3.5	0.9313
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	4.9	0.9238
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	8.0	0.8501
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	9.2	0.9103
AT5G50290			unknown protein		Lus10042105 [exp]	10.4	0.8964
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	12.0	0.9101
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	12.0	0.8782
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	16.2	0.8881
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	18.1	0.8964

Compare expression of checked genes

Lus10026020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.