Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 40 / 8e-05 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026021 pacid=23173235 polypeptide=Lus10026021 locus=Lus10026021.g ID=Lus10026021.BGIv1.0 annot-version=v1.0 ATGGCCGCCATCGGTGCTTTAATTGTCGGACTCTGTCTTCTGTTGGGATGCATCGATTACGTACCTCTGGCTACCGGTACAGCCACATGCAACCAGCAAG TCAAGTACACAAGAAACAACCCTCTGGGGAAGGCGAGGGACGCATTGTTTAGTGAGTTGGTGGCCAACACTTTTAACAACCAAAACATGCAGTACTGCAC TTGGAGAGGCACCCAAGATAGTTACATGTACGGCAACGCTAACTGTGACATGTCGTCCCAGAGCTGCAATGGCAACTACTGTTCCACCACGAAAGAGCAG TGTCAATCCTGTCTAGCGTCCGCTCGAAAGATCCTTGAAGATAGGTGTGGATGCAGCGTTAGCGGCCAGGTTACGACTCATGAGGACAATATACGGTGTT TCTTGCAATACCAGAATACAAGGCTCTGCTAG
AA sequence Show only first row Show all	>Lus10026021 pacid=23173235 polypeptide=Lus10026021 locus=Lus10026021.g ID=Lus10026021.BGIv1.0 annot-version=v1.0 MAAIGALIVGLCLLLGCIDYVPLATGTATCNQQVKYTRNNPLGKARDALFSELVANTFNNQNMQYCTWRGTQDSYMYGNANCDMSSQSCNGNYCSTTKEQ CQSCLASARKILEDRCGCSVSGQVTTHEDNIRCFLQYQNTRLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026021 [exp]	0	1
					Lus10021990 [exp]	2.0	0.8066
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021542 [exp]	5.2	0.7521
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	7.1	0.8058
					Lus10002267 [exp]	8.5	0.6944
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	10.5	0.6713
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	10.8	0.7444
					Lus10028027 [exp]	11.0	0.7060
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	15.5	0.7053
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	15.5	0.7011
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	16.6	0.6506

Compare expression of checked genes

Lus10026021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.