Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66780 110 / 3e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014313 [exp] 174 / 2e-57 AT5G66780 77 / 2e-19 unknown protein Lus10024013 [exp] 74 / 6e-18 AT5G66780 64 / 3e-14 unknown protein Lus10041741 [exp] 69 / 1e-15 AT5G66780 65 / 5e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026022 pacid=23173132 polypeptide=Lus10026022 locus=Lus10026022.g ID=Lus10026022.BGIv1.0 annot-version=v1.0 ATGAATCAGACGATAAGATCGTTTCGTATCAATCAACTGCCGACTGCTCTGTTTCCCCCTTCGAAGCAAGTAAACATACAAAGATCATCATCTTCTTCAA GTACTGTTTGTTTCAGGAAGGTGAGGACACTTTGCAGCGAACCAGAGAGGGAGCAAAACATGGACAAGTCCGATGCGCAGCCCAAGGACAGAAAAGGGGA CGTGATGTCTCATTCATTTGGAGAAGGGTACTCGACGAGGAGCGACGAGGAAGGGTTTGGTGGGGTTTATGGTGGGAACACCGAGGACAACGAGAATCTC GATAAGAAGATTCATGAAGATCACCCTGAGTACGACAAGAGCCAGGGGAGTGAAGTGAAGGAAAAGGAGAAAGCTCGTCACCAGACTAAATGCCAGTGA
AA sequence Show only first row Show all	>Lus10026022 pacid=23173132 polypeptide=Lus10026022 locus=Lus10026022.g ID=Lus10026022.BGIv1.0 annot-version=v1.0 MNQTIRSFRINQLPTALFPPSKQVNIQRSSSSSSTVCFRKVRTLCSEPEREQNMDKSDAQPKDRKGDVMSHSFGEGYSTRSDEEGFGGVYGGNTEDNENL DKKIHEDHPEYDKSQGSEVKEKEKARHQTKCQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66780			unknown protein		Lus10026022 [exp]	0	1
AT2G43190			ribonuclease P family protein ...		Lus10019913 [exp]	4.9	0.8355
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	6.2	0.8161
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	8.8	0.8605
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	10.8	0.8259
AT1G59970			Matrixin family protein (.1)		Lus10037418 [exp]	12.0	0.7536
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	35.5	0.8239
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	35.5	0.8180
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	36.3	0.7854
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	37.6	0.8247
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	40.7	0.7653

Compare expression of checked genes

Lus10026022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.