Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18460 370 / 4e-129 LCV3 like COV 3 (.1) AT2G20130 343 / 2e-118 LCV1 like COV 1 (.1) AT2G20120 343 / 3e-118 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT1G43130 295 / 1e-99 LCV2 like COV 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014314 [exp] 500 / 5e-179 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10011099 [exp] 343 / 4e-118 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10028563 [exp] 308 / 8e-105 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10028564 [exp] 300 / 1e-101 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 300 / 2e-101 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10043220 [exp] 289 / 3e-98 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10018868 [exp] 292 / 1e-97 AT1G43130 387 / 1e-136 like COV 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124100 [exp] 379 / 1e-132 AT2G18460 365 / 2e-128 like COV 3 (.1) Potri.018G082100 [exp] 354 / 1e-122 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.006G158100 [exp] 348 / 3e-120 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.002G065800 [exp] 291 / 5e-98 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 289 / 4e-97 AT1G43130 319 / 2e-110 like COV 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10026023 pacid=23173099 polypeptide=Lus10026023 locus=Lus10026023.g ID=Lus10026023.BGIv1.0 annot-version=v1.0 ATGGAAAGTACGCAAACGGAAAATGGAGACCAAAACGACAATCCGTTTCGCTCTCCGGAGAGTGGCCGAAAAAACAGCAAGAGATGCATTGAGACTTTGG AGTTTGGAGGAGAGTTAGTTTTTCTGTTCTCACTTTTGTTTCCTTCCTTCCTTCCCCAAGCCAAGCTAGCTAGCGAGAGATTGACAGGAAAACTGGGAAC AGAAGGAAAACGATCCCGATCTTTAAAGCGAAGAGATAGAGAGGAATCGAATTCAGATTGGGTGATAATGGCCACGTCGAGGGAGAGGGATCTGGAGCGC CTAATCCCAATTCAAGGTAAACAGAATCCGGACACCGTCATCAGCAATGCCTCCAATTCCTCTGCCTCCAACGTACCCCCCGTCGTCCTTTCCCACACCT CCGGCAAAGAGGCATTTTCCAAGCTGATCCGGAGCTGGGCGTGGAAAAAGTTCATCACCGGAAGTGTGATTCTGCTTCCAATAGCCATCACATTCTGCGT AACCTGGTGGTTCATCCGATTCGTGGATGGTTTCTTCTCCCCAATCTATGCTCTTCTTGGAATCAATGTATTTGGGCTTGGGTTTGTGACGTCGCTCACA TTCATATTCCTGGTTGGGGTATTCATGTCCTCATGGTTGGGCGCTTCTGTACTTAGCTTGGGAGAGTGGTTCATTAACAAGATGCCTTTCGTCAGCTATA TTTACTCTGCTTCCAAACAAATCAGCACAGCTATCTCCCCAGATCAGAATTCTCATGCGTTCAAGGAGGTTGCAATCATAAAGCATCCACGCAACGGAGA GTACGCGTTCGGGTTCATTACTTCAACTGTTCTTCTACGTGGCAACTTGGCTACAGAAGAGCTCTGCTGCGTCTATGTTCCCACCAACCACCTCTACCTT GGAGACATTTACCTCGTCAGCTCCAAAGATGTCATGCGGCCGAATCTGTCGGTACGAGAAGGAATAGAAATCGTGATCTCAGGGGGGATGTCGATACCTG AAATACTGACCACATTGGAAGAACAAGTGATTGATGAAGCGAAACTCGGCAAGTATGGAGTGCCACCGGTATAG
AA sequence Show only first row Show all	>Lus10026023 pacid=23173099 polypeptide=Lus10026023 locus=Lus10026023.g ID=Lus10026023.BGIv1.0 annot-version=v1.0 MESTQTENGDQNDNPFRSPESGRKNSKRCIETLEFGGELVFLFSLLFPSFLPQAKLASERLTGKLGTEGKRSRSLKRRDREESNSDWVIMATSRERDLER LIPIQGKQNPDTVISNASNSSASNVPPVVLSHTSGKEAFSKLIRSWAWKKFITGSVILLPIAITFCVTWWFIRFVDGFFSPIYALLGINVFGLGFVTSLT FIFLVGVFMSSWLGASVLSLGEWFINKMPFVSYIYSASKQISTAISPDQNSHAFKEVAIIKHPRNGEYAFGFITSTVLLRGNLATEELCCVYVPTNHLYL GDIYLVSSKDVMRPNLSVREGIEIVISGGMSIPEILTTLEEQVIDEAKLGKYGVPPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18460		LCV3	like COV 3 (.1)		Lus10026023 [exp]	0	1
AT1G09290			unknown protein		Lus10023158 [exp]	7.8	0.6896
					Lus10030338 [exp]	23.7	0.6212
AT1G12330			unknown protein		Lus10032197 [exp]	31.0	0.6714
AT1G73090			unknown protein		Lus10037331 [exp]	43.3	0.6568
AT2G33580			Protein kinase superfamily pro...		Lus10036731 [exp]	43.7	0.5969
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	59.0	0.6476
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	66.3	0.6460
AT5G50410			unknown protein		Lus10007607 [exp]	66.7	0.6397
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	88.0	0.6282
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	101.1	0.5990

Compare expression of checked genes

Lus10026023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.