Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50670 342 / 9e-114 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT2G43370 91 / 4e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 66 / 4e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 69 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 58 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 58 / 5e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G73530 57 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 55 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 55 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 57 / 1e-08 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014317 [exp] 451 / 4e-156 AT3G50670 466 / 2e-162 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10027015 [exp] 94 / 9e-21 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025557 [exp] 94 / 9e-21 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027035 [exp] 67 / 1e-11 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040854 [exp] 58 / 2e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 61 / 4e-10 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10016639 [exp] 57 / 9e-10 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10014814 [exp] 61 / 1e-09 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 61 / 2e-09 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026900 [exp] 384 / 4e-129 AT3G50670 322 / 6e-106 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G124300 [exp] 364 / 8e-122 AT3G50670 357 / 8e-120 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.017G033400 [exp] 90 / 2e-19 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 71 / 3e-13 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 67 / 4e-13 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 68 / 4e-12 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 63 / 8e-11 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 62 / 2e-10 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.003G074900 [exp] 58 / 8e-10 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 58 / 9e-10 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] RRM PF12220 [flax] [poplar] U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
Representative CDS sequence Show only first row Show all	>Lus10026026 pacid=23173184 polypeptide=Lus10026026 locus=Lus10026026.g ID=Lus10026026.BGIv1.0 annot-version=v1.0 ATGGGAGACTACAATGATGCGCTAATGCGCAACCAGAACTCTGCTGGCCGGGGCGCTACCAAGCAGCAAAACCGCGCTAATGTTCTCCAGCTCAAACTGA TTGGGCAAAGCCATCCTACTGGATTAACTGCAAACCTTCTGAAACTGTTTGAGCCTCGCCCTCCTTTGGAATTTAAACCTCCTCCGGAGAAGCGAAAATG CCCTCCTTACTTTGGTATGGCACAGTTTGTGAATAATTTTGCCGAGCCTGGTGACCCTGAATATGCTCCACCTGTTCAAGAAGCTGAAACTCCTATGCAG AGACGAGCCAGAATCCACAAGTTACGGTTGGAAAAAGGTGCAGAGCATGCTGCTGAAGAGCTTAAAAAATATGATCCAGCTAATGACCCCAATGTTTCTG GAGATCCATACAAGACATTGTTCGTGGCTAGGCTGAGTTATGAGACATCAGAGAGTAGGATTAAAAGGGAGTTTGAGTCTTATGGACCAATAAAAAGGGT TCGACTGGTGACAGATAAAGATACAAATAAACCCAAAGGCTATGCCTTCATAGAATATGTGCATACACGAGACATGAAAGCTGCATACAAGCAAGCTGAT GGAAGGAAGATTGATGGCAGAAGGGTACTTGTTGATGTCGAGCGTGGTAGAACTGTCCCAAATTGGAGACCTCGCAGGCTTGGTGGTGGACTTGGGACTA GCAGAGTCGGGGGCGAAGAAGTTGCTGCAAGAGAAACACAGCAACCACAAGGTCCATCACGGTCTGAAGAACCGAAGGCACGTGATGATCGTATTGTTGA AAGGGAAAAGTCCCGTGAAAGAGGGAGGGAGAGGGAGAGGGAAAGAGAAAAGTCGCGCGAGATATCCCATGAACGTCCAAGGGATCGTGACCGTAGGGAG GATAGGCACCACAGAGACCGTGACAGGGAAAAAGACAAGGACCGTGATGGTCGTCGTGATCGCGACAGAGATAGGGATGGCCGTCGTGATCGAGGTCGTG ACCATGACCGCGAAAGAGGTCGAGAACATGGTAGAGACCGCGAACGAACAAGAGATAGGGAGAGAGATAGGGAATATGATGGTGGAGATGACGACCGTGG CCGTTCCCGTGATAGAGAGCACACCTATGATCGCGTGGACTCAAAACACGATAGGGATCGTGGGGACCCAGATTATGATCATGCTGATGTAGAGGAAGAT CACGGCTGGTATGAACAACCTGACCAGGGACGCAAGAGGTCTGCTGATGTAGAGCAACAGTATGACCGCTATGACCATCATCGAGGTAAGCGAAGTAAGG GACAGTACGATCCCTTGGATGTTCCAGGTGATGATGACCATTACGATCAGTATGCTGATCGTGATCGTGACCGTGATCGATATGGTGCGGTGGATGATGA TGCCTACCGCTATGATTGA
AA sequence Show only first row Show all	>Lus10026026 pacid=23173184 polypeptide=Lus10026026 locus=Lus10026026.g ID=Lus10026026.BGIv1.0 annot-version=v1.0 MGDYNDALMRNQNSAGRGATKQQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYFGMAQFVNNFAEPGDPEYAPPVQEAETPMQ RRARIHKLRLEKGAEHAAEELKKYDPANDPNVSGDPYKTLFVARLSYETSESRIKREFESYGPIKRVRLVTDKDTNKPKGYAFIEYVHTRDMKAAYKQAD GRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGEEVAARETQQPQGPSRSEEPKARDDRIVEREKSRERGREREREREKSREISHERPRDRDRRE DRHHRDRDREKDKDRDGRRDRDRDRDGRRDRGRDHDRERGREHGRDRERTRDRERDREYDGGDDDRGRSRDREHTYDRVDSKHDRDRGDPDYDHADVEED HGWYEQPDQGRKRSADVEQQYDRYDHHRGKRSKGQYDPLDVPGDDDHYDQYADRDRDRDRYGAVDDDAYRYD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	0	1
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	1.7	0.8543
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	3.2	0.8233
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	6.6	0.7975
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	7.1	0.8155
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	10.7	0.7913
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	13.0	0.8354
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	13.6	0.8109
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10041854 [exp]	14.4	0.8359
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	15.4	0.8027
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	18.2	0.7998

Compare expression of checked genes

Lus10026026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.