Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 420 / 5e-141 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 408 / 8e-136 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G18810 403 / 2e-133 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G49270 400 / 2e-132 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G24550 395 / 6e-131 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G23540 373 / 9e-122 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24540 365 / 3e-121 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G52290 361 / 1e-119 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G70460 363 / 7e-118 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 347 / 8e-112 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014318 [exp] 493 / 1e-173 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10024020 [exp] 484 / 9e-167 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 476 / 2e-163 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014319 [exp] 431 / 6e-148 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 404 / 3e-134 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 401 / 7e-133 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 391 / 5e-132 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 397 / 9e-132 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10043219 [exp] 392 / 6e-130 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124400 [exp] 426 / 7e-144 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 426 / 4e-143 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 416 / 7e-139 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 412 / 1e-137 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 403 / 3e-134 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 377 / 4e-125 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 370 / 3e-122 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G189700 [exp] 374 / 5e-122 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 366 / 1e-118 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 361 / 1e-116 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026027 pacid=23173307 polypeptide=Lus10026027 locus=Lus10026027.g ID=Lus10026027.BGIv1.0 annot-version=v1.0 ATGATAGCGGCCACCGGAGGTTTCGCGCAGTCGAATCTGTTGGGACAGGGAGGGTTCGGGTATGTGCATAAGGGGGTTTTGCCCAACGGGAAGGAAGTAG CGGTGAAGAGCTTGAAATCTGGGAGTGGGCAAGGGGAGAGGGAATTCATGGCGGAGGTTGAGATTATTAGTAGGGTTCATCACCGGCATCTTGTGTCGCT GGTGGGGTATTCCATTACTGATCAGCAGAGGCTCTTGGTTTACGAGTTCCTTCCTAATGACACCCTTGAACATCATCTTCATGGTAGGGGTCTCCCCATT ATGGATTTCCCTACCAGGATGAAAATAGCATTGGGTTCTGCCAAGGGACTTGCTTACCTCCATGAAGATTGCCACCCGAAGATCATTCATCGCGATATCA AGTCGTCCAACATTCTCCTCGACTTAAACTTTGAAGCTAAGGTGGCTGACTTCGGTTTGGAAAAGCTCTCCACCGACAATCACACTCATGTCTCGACTCG CGTAATGGGCACATTCGGGTATTTAGCTCCGGAATACGCATCGAGCGGCAAGCTAACTGAGAAATCCGACGTGTTTTCATTTGGAATCATGCTGCTGGAA CTCATTACCGGAAAGAGACCTGTAGATCCGACGAATGTCATGGAAGATAGCTTAGTGGACTGGGCTAGACCGCTTCTAACTCGAGCATTGGACGAAGGCA ATCTCAACGAGTTGGTCGATCTCAAAATGGAGAGACGAAGAGGTCGCCCGATTATGGATTTCCCTACCAGGCTCAAAATAGCACTGGGTTCTGCCAAGGG ACTTGCTTACCTCCATGAAGATTGCCACCCGAAGATCATTCATCGCGATATCAAGTCGTCCAACATTCTCCTCGACTTAAACTTTGAAGCTAAGGTGGCT GACTTCGGGTTGGCCAAGCTCTCTACCGACAATCACACTCATGTCTCGACTCGCGTAATGGGCACATTCGGGTATTTAGCTCCGGAATACGCATCGAGCG GCAAGCTAACTGAGAAATCCGACGTGTTTTCATTTGGAATCATGCTGCTGGAACTCATTACCGGAAAGAGACCTGTAGATCCGACGAATGTCATGGAAGA TAGCTTAGTGGACTGGGCTAGACCGCTTCTAACTCGAGCATTGGACGAAGGCAATCTCAACGAGTTGGTCGATCTCAAAATGGAGGGAAATTTCAATCCG AACGAAATGCATAGGATGATTGCTTGTGCTGCCGCTAGCATTCGCCACTCTGCGAAAAAGCGGCCCAAGATGAGCCAGATAGTACACACGTTAGAAGGAG ACGCATCGCTGGACGACTTAAACGACGGGATAAGGCCCGGCCAAAGTTCGGTCTTCGGTGCAGCCGGTGGGAGCGGAGGGGGGACGTACGACATGGGTGC TTACAATGCCGACATGGCAAGGTTCCGACAGGTGGCATTGGCTAGCCAGGAATTCGACAGCAGCGAACATGCCCCAGCCTCGTCAAATAGCGATTCTCGG GACTTGGCACCCGCGTCTCTTCGCAAGTACAATTTGTAA
AA sequence Show only first row Show all	>Lus10026027 pacid=23173307 polypeptide=Lus10026027 locus=Lus10026027.g ID=Lus10026027.BGIv1.0 annot-version=v1.0 MIAATGGFAQSNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGYSITDQQRLLVYEFLPNDTLEHHLHGRGLPI MDFPTRMKIALGSAKGLAYLHEDCHPKIIHRDIKSSNILLDLNFEAKVADFGLEKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLE LITGKRPVDPTNVMEDSLVDWARPLLTRALDEGNLNELVDLKMERRRGRPIMDFPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKSSNILLDLNFEAKVA DFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGKRPVDPTNVMEDSLVDWARPLLTRALDEGNLNELVDLKMEGNFNP NEMHRMIACAAASIRHSAKKRPKMSQIVHTLEGDASLDDLNDGIRPGQSSVFGAAGGSGGGTYDMGAYNADMARFRQVALASQEFDSSEHAPASSNSDSR DLAPASLRKYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	0	1
					Lus10022169 [exp]	4.1	0.7617
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	6.6	0.7498
AT5G16100			unknown protein		Lus10020810 [exp]	7.7	0.6790
					Lus10014737 [exp]	8.7	0.7129
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	10.0	0.7129
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	11.2	0.6511
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	11.2	0.7129
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10034220 [exp]	11.4	0.5184
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	12.2	0.7129
					Lus10021773 [exp]	13.2	0.7129

Compare expression of checked genes

Lus10026027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.