Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50685 156 / 4e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014321 [exp] 216 / 1e-72 AT3G50685 201 / 7e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027400 [exp] 157 / 1e-49 AT3G50685 164 / 1e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026029 pacid=23173271 polypeptide=Lus10026029 locus=Lus10026029.g ID=Lus10026029.BGIv1.0 annot-version=v1.0 ATGCTGTCATTATCCTCGCCACCGACGGCAGCCTCAATACCTTCCGCATTCCATTTCCACAACCGCCGTCGCAATTCTAATGCCGCCGCCGCAACCAGGC TCTCAAACAACCACCACCGCTGCCGCGGCCTCAGAGTGTTAGCCAAGGCGGCGGAGGAGAGCGGGGGCGTGGCAGAGAAGGCGGCAATAGCAGGGGGGTT GATCTCAACACCAGTAATCGCGTGGTCGCTGTATACCCTCAAGACGACCGGGTGCGGCCTCCCGCCGGGACCGGGAGGGTCAATCGGAGCACTGGAAGGG GTGAGTTACCTGGCAGTGGTGGGAATCATCGGGTGGTCTGTTTACACCAAGGCCAAAACCGGGTCGGGTCTTCCCAACGGGCCGTTCGGGTTGCTGGGCG CCGTAGAGGGGCTGTCGTATCTTTCCTTGGTTGCGATTTTGGTTGTGTTTGGTCTTCAGTTTCTGGATAAGGGTTACATTCCGGGTGCGGTTCCGGTTCC CGGCGATCAGTGTTTCGGGTAG
AA sequence Show only first row Show all	>Lus10026029 pacid=23173271 polypeptide=Lus10026029 locus=Lus10026029.g ID=Lus10026029.BGIv1.0 annot-version=v1.0 MLSLSSPPTAASIPSAFHFHNRRRNSNAAAATRLSNNHHRCRGLRVLAKAAEESGGVAEKAAIAGGLISTPVIAWSLYTLKTTGCGLPPGPGGSIGALEG VSYLAVVGIIGWSVYTKAKTGSGLPNGPFGLLGAVEGLSYLSLVAILVVFGLQFLDKGYIPGAVPVPGDQCFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50685			unknown protein		Lus10026029 [exp]	0	1
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	1.0	0.9502
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10002312 [exp]	2.4	0.9298
AT1G51100			unknown protein		Lus10011316 [exp]	2.4	0.9410
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	6.1	0.8728
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	6.2	0.8893
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	9.2	0.9229
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	10.7	0.9083
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	11.4	0.8791
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	13.9	0.9027
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	16.2	0.8893

Compare expression of checked genes

Lus10026029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.