Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66740 633 / 0 Protein of unknown function (DUF620) (.1) AT1G75160 399 / 3e-138 Protein of unknown function (DUF620) (.1) AT5G05840 381 / 1e-130 Protein of unknown function (DUF620) (.1) AT3G55720 322 / 2e-107 Protein of unknown function (DUF620) (.1) AT3G19540 300 / 6e-98 Protein of unknown function (DUF620) (.1) AT1G49840 296 / 1e-96 Protein of unknown function (DUF620) (.1) AT1G27690 290 / 4e-95 Protein of unknown function (DUF620) (.1) AT1G79420 237 / 2e-74 Protein of unknown function (DUF620) (.1) AT5G06610 215 / 1e-66 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014323 [exp] 750 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 395 / 1e-136 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1) Lus10007157 [exp] 392 / 2e-135 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 390 / 9e-134 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 389 / 2e-133 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 298 / 1e-97 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 292 / 5e-95 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 255 / 1e-80 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 221 / 1e-70 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027800 [exp] 638 / 0 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 449 / 4e-158 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 443 / 9e-156 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 413 / 3e-143 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 405 / 6e-140 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 310 / 6e-102 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 299 / 8e-98 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 293 / 2e-95 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 257 / 9e-83 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 255 / 5e-82 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10026031 pacid=23173198 polypeptide=Lus10026031 locus=Lus10026031.g ID=Lus10026031.BGIv1.0 annot-version=v1.0 ATGAGGAAATTGTGCCCGAACATGGACAAAGACGACGCCCTTGAGACCGTTCTCGAGGTCCCCATCCCTGAAGAAATGTTCACCGGCATGGGAAACAACA CCACCTTGCGTTTACAGAACATGCTCACTTGGATGAGAGCTCAAACTTCCGATAAATGGTCACAGCCCGTCATCGCCAGCCGGATCAACGAGCTCCGCTT CCTTCTCTACTTGGTTGGATCGCCGCTCATCCCTCTTCAGGTTCAAGTCGGCCACGCTGTCCATAAGGCCGTCCGGGATTCCTCCATCCAAGCGTCGACG GCCAAGTACATAGTGCAGCAGTACATAGCGGCGACGGGAGGGCAGCCGGCGCTGAACACGGTGCACAGTATGTGCGTGATTGGGGCGGTGAAGATAAGTG CGTCGGAGTTTCACCCAGGGGATCAGACGATAAGCGTGAAGAACACGGAGGAAAACGGAGGGTTCGTACTGTGGCAGAAGGATCCGGATTTGTGGATATT GGAGCTGGTGGTTTCTGGGTGTAAAGTGATATGCGGAAGCAACGGGAAGGTGTCTTGGAGGCATTCTTCTAACCAACAAACTCCCATTTCTAGAGGATCT CCCCGCCCTCTCCGGCGCTTTCTCCAGGGGTTGGACCCAAGATCAACAGCAAACCTGTTTACCGACGCAACATGCATAGGCGAGAAGATAATAAACAACG AAGACTGCTTCATCCTCAAGCTCGAAACCAGCCCCGCGATCAGGGAGGCACAGAGCGGTCCGAACTGCGAGATAATCCACCACACGATCTGGGGATACTT CAGCCAGAGGTCGGGTCTTCTGGTCCAGTTCGAGGACTCGAGGCTGCTGCGAATGAGGACCAAAGACGACTACGACGTGTTCTGGGAGACCAGCACCGAG TCGGTCATCGAAGAGTACAGGTACGTCGATGGGGTCAACATCGCGCACAGCGGGAAAACTCGGGTGACCGTTTACCGGTACGGCGAGCAGTCGGCGAACC ACAAGCGGGAGATACGCGAGAGTTGGAAGATCGATGAGGTTAATTTCAATGTCTGGGGGTTAAGTGCTGATTATTTCTTGCCTCCTTCTGACTTGGACCT TAGTAGCAGTAATGATCAGAAGCTAAGGTGA
AA sequence Show only first row Show all	>Lus10026031 pacid=23173198 polypeptide=Lus10026031 locus=Lus10026031.g ID=Lus10026031.BGIv1.0 annot-version=v1.0 MRKLCPNMDKDDALETVLEVPIPEEMFTGMGNNTTLRLQNMLTWMRAQTSDKWSQPVIASRINELRFLLYLVGSPLIPLQVQVGHAVHKAVRDSSIQAST AKYIVQQYIAATGGQPALNTVHSMCVIGAVKISASEFHPGDQTISVKNTEENGGFVLWQKDPDLWILELVVSGCKVICGSNGKVSWRHSSNQQTPISRGS PRPLRRFLQGLDPRSTANLFTDATCIGEKIINNEDCFILKLETSPAIREAQSGPNCEIIHHTIWGYFSQRSGLLVQFEDSRLLRMRTKDDYDVFWETSTE SVIEEYRYVDGVNIAHSGKTRVTVYRYGEQSANHKREIRESWKIDEVNFNVWGLSADYFLPPSDLDLSSSNDQKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	0	1
					Lus10038642 [exp]	2.6	0.9613
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	10.4	0.9529
					Lus10017801 [exp]	12.0	0.8905
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	13.1	0.9390
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	13.3	0.9505
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	15.0	0.9402
					Lus10032968 [exp]	15.4	0.9491
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	17.2	0.9453
					Lus10024762 [exp]	18.8	0.9453
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	20.3	0.9453

Compare expression of checked genes

Lus10026031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.