Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18480 609 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 592 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G18830 541 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 506 / 2e-176 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 503 / 2e-175 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G20780 383 / 3e-128 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 199 / 1e-57 ATINT1 inositol transporter 1 (.1) AT1G30220 181 / 4e-50 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT5G16150 175 / 3e-48 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G59250 174 / 6e-48 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014323 [exp] 930 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10041731 [exp] 761 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10040482 [exp] 533 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 533 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 531 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 505 / 8e-176 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 500 / 5e-174 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 497 / 6e-173 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 491 / 2e-170 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027900 [exp] 669 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 551 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 529 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 516 / 2e-180 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 420 / 4e-143 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 387 / 1e-129 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 374 / 1e-124 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 211 / 4e-62 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 210 / 8e-62 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 181 / 2e-50 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10026032 pacid=23173268 polypeptide=Lus10026032 locus=Lus10026032.g ID=Lus10026032.BGIv1.0 annot-version=v1.0 ATGGTGGCGATGGAGCAGAAGGAGGAATTCAATTTCTACGCCGCTGCATGCGCCATAGTTGCTTCCATAATATCCATCATCTTCGGATATGATACAGGAG TTATGAGCGGAGCAATGATCTTCATCAAAGACGATCTCAAAATCAACGACACACAAGTCGAAGTCCTCGCCGGAATCCTCAACCTCTGCGCCCTGCTCGG CTCACTACTCGGTGGCAGAATCTCCGATTACATAGGCCGGAAATACACCATCGCCATGGCATCAATCATTTTCCTCGTCGGATCGGTGTTCATGGGCTGG GGACCCAATTACGCCATCCTCATGACCGGCAGGTGCGTCGCCGGAGTCGGCGTCGGATTCGCCCTCATGATAGCTCCCGTCTACTCCGCCGAGATCTCCT CCGCTCGTTCCAGAGGATTCCTAACCTCACTTCCCGAGTGGGGGGTCAGCATCGGGATCCTCCTCGGATACATATCCAACGTCGTCTTCGCCAAGCTTCC GTTAAAACTCGGCTGGCGGTTGATGATCGGAATCGCCGCGATTCCTTCGCTGATTTTATCACTAGCCATCTCCAAAATGCCAGAATCGCCACGGTGGCTG GTTATGCAGGGGAAATTAGGGGAAGCGAAGAGGATTCTGCTGTTGGTGTCCAATTCCAAGGAGGAAGCGGAAAATCGGTTCAGAGAAATCAAAATCGCCG CCGGAATCGATCCGAACTGCCAGGAACCGACGGTTAAGATTCAGAATAAGAATGAATCGAGAGGCAAAGGCGTTTGGAAGGAGCTGATTGTACGGCCGAC TCCGGCAGTACGGACGATTCTGATCGCGGCGGTCGGAATACATTTCTTCGAACATGCGGTGGGCACGGAGGCGGTTGTGCTGTACAGTCCGAGAATCTTC GAGAAGGCGGGAATCGTCGACAAGCACAAGCTCCTGCTAGCGACGGTCGGCGTCGGACTGACGAAATTCACCTTCATAGTGATCGCGACGTTCCTTTTGG ATCGGGTCGGGCGGCGGAGCCTGCTTCTATTCAGCACCACGGGAGTGATCGCGGCGTTGACCTTGTTGGGGACTTGTTTGACTATAGTGGAGAGGAGGGA AAAAAGCGGGGAGGAGAAGATGATGTGGGCCTTGGGGATGAGTATAGTGTCGGCCTATGGGTTCGTTGCGTTCGTTAACATCGGATTGGCACCTGTGACG TGGGTTTATAGCTCCGAGATTTTTCCAACAAGGTTGAGGGCTCAGGGGTACGGTATGGGAGTGGCGATGAATAGGTTGATGAACGCGGTGATTTCAATGA CGTTTATTTCGCTGTATAAAGCGATCACGATTGGGGGAGCGTTCTTTTTGTTTGCGGGGGTATCGGTCGTGGCGTGGTTTTTCTTCTATTTCGTGTTTCC GGAGACAAAAGGGAGGTCATTGGAGGAGATGGAGGAGCTGTTTGGGAACGGATTTAGGTCCGGTTTGAAACAGAGCAAAGTGCAAGCTCAGGATCAAGGC AAGTGTGTAAGCCCATAA
AA sequence Show only first row Show all	>Lus10026032 pacid=23173268 polypeptide=Lus10026032 locus=Lus10026032.g ID=Lus10026032.BGIv1.0 annot-version=v1.0 MVAMEQKEEFNFYAAACAIVASIISIIFGYDTGVMSGAMIFIKDDLKINDTQVEVLAGILNLCALLGSLLGGRISDYIGRKYTIAMASIIFLVGSVFMGW GPNYAILMTGRCVAGVGVGFALMIAPVYSAEISSARSRGFLTSLPEWGVSIGILLGYISNVVFAKLPLKLGWRLMIGIAAIPSLILSLAISKMPESPRWL VMQGKLGEAKRILLLVSNSKEEAENRFREIKIAAGIDPNCQEPTVKIQNKNESRGKGVWKELIVRPTPAVRTILIAAVGIHFFEHAVGTEAVVLYSPRIF EKAGIVDKHKLLLATVGVGLTKFTFIVIATFLLDRVGRRSLLLFSTTGVIAALTLLGTCLTIVERREKSGEEKMMWALGMSIVSAYGFVAFVNIGLAPVT WVYSSEIFPTRLRAQGYGMGVAMNRLMNAVISMTFISLYKAITIGGAFFLFAGVSVVAWFFFYFVFPETKGRSLEEMEELFGNGFRSGLKQSKVQAQDQG KCVSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10026032 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	2.8	0.8576
AT5G04500			glycosyltransferase family pro...		Lus10037920 [exp]	4.6	0.8854
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	7.2	0.8811
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10037121 [exp]	19.1	0.8559
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10015704 [exp]	24.5	0.8159
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	27.3	0.8648
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	38.1	0.8503
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	42.9	0.8453
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	47.3	0.8294
					Lus10014739 [exp]	53.4	0.8391

Compare expression of checked genes

Lus10026032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.