Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 220 / 3e-69 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G35530 109 / 2e-26 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 105 / 4e-25 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT4G01120 90 / 7e-20 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G46270 89 / 3e-19 bZIP GBF3 G-box binding factor 3 (.1.2) AT3G49760 54 / 8e-09 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT5G60830 55 / 9e-09 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT1G75390 53 / 1e-08 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G18160 54 / 2e-08 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G30530 53 / 3e-08 bZIP ATBZIP42 basic leucine-zipper 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014324 [exp] 502 / 1e-179 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10041720 [exp] 352 / 2e-120 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10024030 [exp] 340 / 8e-116 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10003034 [exp] 86 / 3e-18 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10005146 [exp] 86 / 6e-18 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10029101 [exp] 56 / 1e-08 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 55 / 1e-08 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10013059 [exp] 54 / 3e-08 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10003255 [exp] 51 / 1e-06 AT1G19490 194 / 2e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029400 [exp] 311 / 2e-104 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.005G126000 [exp] 295 / 7e-98 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 109 / 1e-26 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 106 / 3e-25 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.002G167100 [exp] 96 / 1e-21 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 88 / 5e-19 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.015G047700 [exp] 55 / 2e-08 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.010G135200 [exp] 55 / 2e-08 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 54 / 3e-08 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.007G006900 [exp] 54 / 4e-08 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF07777 [flax] [poplar] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Lus10026033 pacid=23173087 polypeptide=Lus10026033 locus=Lus10026033.g ID=Lus10026033.BGIv1.0 annot-version=v1.0 ATGGGAACAGGTGAAGAGAACACACCTGCTAAGCCGTCGTCTAAGCCGGCAGCTTCTTCGACTCAGGAAGCTCCAACAACACCTGCATATCCTGAGTGGC CGGGTTCCATGCAGGTTTATTATGGTGCTGGAGCTACTCCACCGTTTTTCCCATCAAGTGTCGCCTCTCCTCACCCTTATGTATACCAACATCCCATGAT GCCACATTATGGGACCCCAGTTCCTTACCCAGCTATGTATCCTGGGGGTGTATATGCGCATCCTAACATGGCCATGACACCAAATTCTATGGCGCCAGGC GTGGAAATGGAGGGAAAGGCGGCTAATGGAAAGGATCAACCTTCGGGCAAGAAATCAAAGGGAACGTCTGCAAGCAAAGCTGGAGAGAGCAGAAAAGTAG CTTCTGGGTCAGGAAACGATGCTGTCTCCCAAAGCGGAGAAAGTGGTAGTGACGGCTCATCAGATGGTAGCGATGAACAGCAGGAATATACTGGAAGGAA GAAGGGAAGCTTTAACCAGATGCTTGCAGATGCCAATGCACAAAACAACACTGCAGCGCCAAATGCCCAAGGTGCTTTTCCTGTTGTATCTGTGCCTGGA ACCAATCTAAATATTGGGATGGACTTATGGAATGCCTCTCCGGCTGCTGCTGCTGCTTTAGGAACTGCAAAAATGAGGTCTGGTGGCACTTCAGGAATTG TTCCCACTCCTGAACAGTGGGGTCAGCAGGATGAACGTGAAGTGAAAAGACAGAAGAGAAAGCAGTCCAACAGGGAGTCTGCCAGAAGATCGAGGTTGCG CAAGCAGGCTGAATGTGAAGAGCTGCAACACAAGGTGGAAAACTTGAACAGTGACAATCACAATCTTAAAAATGAGTTGTTGAGACTCTCGGAGGAGTGC GAGAAGCTGAAAGCTGAGAACGATTGCATCAAGGTTCATATCCATGCCTCCCTTGTAGCTTCTTGCAGAATAATGATACTGGTTTGTGAACTAAACATCA TAAGTATCAATCACACTTACCGAAAACTTGTATTTCAGAAAAAATTGAAGGAATCATACGGGCAAGAAGCAACAGATCAACTCGAGCAGAATGATTCGGG GCGGGGTGATGAAGGCAATAGTTGA
AA sequence Show only first row Show all	>Lus10026033 pacid=23173087 polypeptide=Lus10026033 locus=Lus10026033.g ID=Lus10026033.BGIv1.0 annot-version=v1.0 MGTGEENTPAKPSSKPAASSTQEAPTTPAYPEWPGSMQVYYGAGATPPFFPSSVASPHPYVYQHPMMPHYGTPVPYPAMYPGGVYAHPNMAMTPNSMAPG VEMEGKAANGKDQPSGKKSKGTSASKAGESRKVASGSGNDAVSQSGESGSDGSSDGSDEQQEYTGRKKGSFNQMLADANAQNNTAAPNAQGAFPVVSVPG TNLNIGMDLWNASPAAAAALGTAKMRSGGTSGIVPTPEQWGQQDEREVKRQKRKQSNRESARRSRLRKQAECEELQHKVENLNSDNHNLKNELLRLSEEC EKLKAENDCIKVHIHASLVASCRIMILVCELNIISINHTYRKLVFQKKLKESYGQEATDQLEQNDSGRGDEGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10026033 [exp]	0	1
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	1.0	0.9365
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	4.2	0.8279
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	23.0	0.7978
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	47.3	0.7754
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	52.6	0.8039
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	56.9	0.7948
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	82.1	0.7857

Compare expression of checked genes

Lus10026033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.