Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66710 340 / 6e-115 Protein kinase superfamily protein (.1) AT3G50720 308 / 1e-102 Protein kinase superfamily protein (.1) AT3G27560 295 / 8e-98 ATN1 Protein kinase superfamily protein (.1) AT5G01850 290 / 4e-96 Protein kinase superfamily protein (.1) AT5G40540 289 / 1e-95 Protein kinase superfamily protein (.1) AT5G50180 286 / 1e-94 Protein kinase superfamily protein (.1) AT3G50730 287 / 2e-94 Protein kinase superfamily protein (.1) AT1G62400 195 / 4e-59 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 184 / 4e-54 Protein kinase superfamily protein (.1.2.3.4) AT4G35780 186 / 1e-53 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032086 [exp] 294 / 1e-97 AT5G50180 565 / 0.0 Protein kinase superfamily protein (.1) Lus10025154 [exp] 295 / 2e-97 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10035233 [exp] 293 / 3e-97 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 283 / 9e-93 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10020018 [exp] 196 / 4e-59 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10022653 [exp] 194 / 4e-57 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 194 / 6e-57 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 194 / 2e-56 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10015541 [exp] 196 / 3e-56 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343900 [exp] 298 / 2e-99 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.016G134900 [exp] 298 / 4e-99 AT5G01850 487 / 3e-174 Protein kinase superfamily protein (.1) Potri.017G065500 [exp] 298 / 6e-99 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179457 [exp] 197 / 4e-59 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 197 / 1e-58 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G001900 [exp] 194 / 2e-58 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G179514 [exp] 198 / 3e-58 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.011G022800 [exp] 193 / 3e-58 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.009G139400 [exp] 196 / 2e-57 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 191 / 1e-55 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026034 pacid=23173230 polypeptide=Lus10026034 locus=Lus10026034.g ID=Lus10026034.BGIv1.0 annot-version=v1.0 ATGGCGCCGACGGCGGTGGTTTACCATAACGATTTTGATGAGGAAATCAACACGACCGCCTCCTCCGACAACAACAACAACAATGGTATTAATCCTCATT TCATCTTCACCATTGATCGGATATTGTTGATCGATCCTCGCGAAGTTTTCATTCATAAACTAATTGGCGAGGGCAACAGCTCCCTGGTTTATTCCGGAAT GTTTGGCACCAAGTCCGTCGCCATAAAAGTAATCCAACCCATGAGAACATCCGACGTTCTTTTCGAACATAAAGAACGGTTCGAAAGGGAGGTTACGATC CAATCCAAGACCGATCACAATAGTATTGTTCAGTTGGTCGGAGCATCTGTCGATCCGGCAATGTTCTTGATCACGGAGCTGATGCCTGGCGGCACCTTAC AAAAGTACCTAATGAGCATCCGTCCCGATCGGCTAAATTTGGAACTGGTCCTTAGTTTTGCATTGGACATCTCTCGTGCAATGGAGTATTTGCATGACAT TGGCATCATCCACCGTGACCTAAAACCTAGTAATTTACTGCTAACCGAAGATAAGAAGCATGTGAAAATTGGTGATTTTGGACTTGCAAAGGAACTAATG ACAAACGAAATGACGTGTGAAGCAGGCACTTATAGGTGGATGGCTCCTGAGGTATTTAGCAAAGAATCATTGCAAATGGGGAGGAAGAAGCATTACGATC ATAAGGTGGATGTCTATAGCTTTGCAATCATTCTGTGGGAATTACTTACCAATGAATCTCCCTACAAAGGAAGGAATGTCCTTGCCATCGCCTATGCAGC GGTCGCCAAGAAAGAGAGACCTAGCTTGGAAAACCTTCCAAACGACATCGTTCCACTACTGCAATCATGTTGGTCCGACGATCCAAGCATTCGGCCGGAA TTTGCAGAAATCACAACGCACCTGGAAATCGCGTTGGACAAGGTGAGGGGTAATGTCGGAATTTCGTCATCGTCAATAATGATTAGCGATGGGGAGAAGG ATCCCCGGCCGCCGCAAAATGAAAACGACGGCGAGGACGGTCCGTTGATAAAGAAGGCGGGTGGGAAGGGGAAGAAACAGAGACACGGAACGCCCTTCTT CATTTGTTTCAATGACTGTCTTTGTGAGTAG
AA sequence Show only first row Show all	>Lus10026034 pacid=23173230 polypeptide=Lus10026034 locus=Lus10026034.g ID=Lus10026034.BGIv1.0 annot-version=v1.0 MAPTAVVYHNDFDEEINTTASSDNNNNNGINPHFIFTIDRILLIDPREVFIHKLIGEGNSSLVYSGMFGTKSVAIKVIQPMRTSDVLFEHKERFEREVTI QSKTDHNSIVQLVGASVDPAMFLITELMPGGTLQKYLMSIRPDRLNLELVLSFALDISRAMEYLHDIGIIHRDLKPSNLLLTEDKKHVKIGDFGLAKELM TNEMTCEAGTYRWMAPEVFSKESLQMGRKKHYDHKVDVYSFAIILWELLTNESPYKGRNVLAIAYAAVAKKERPSLENLPNDIVPLLQSCWSDDPSIRPE FAEITTHLEIALDKVRGNVGISSSSIMISDGEKDPRPPQNENDGEDGPLIKKAGGKGKKQRHGTPFFICFNDCLCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66710			Protein kinase superfamily pro...		Lus10026034 [exp]	0	1

Compare expression of checked genes

Lus10026034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.