Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36750 345 / 1e-120 Quinone reductase family protein (.1) AT5G54500 250 / 3e-84 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT4G27270 249 / 4e-84 Quinone reductase family protein (.1) AT5G58800 223 / 2e-73 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014325 [exp] 430 / 2e-154 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10041718 [exp] 390 / 2e-138 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10040486 [exp] 266 / 5e-90 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10018401 [exp] 250 / 5e-84 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10006748 [exp] 247 / 7e-83 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10024032 [exp] 240 / 3e-81 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1) Lus10020076 [exp] 241 / 1e-80 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10007612 [exp] 242 / 2e-80 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10005862 [exp] 226 / 5e-75 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029600 [exp] 357 / 1e-125 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.005G126200 [exp] 354 / 1e-124 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.004G151100 [exp] 318 / 3e-110 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.001G410700 [exp] 255 / 2e-86 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.004G028900 [exp] 251 / 2e-84 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.011G129400 [exp] 250 / 3e-84 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.011G033100 [exp] 249 / 5e-84 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.009G044400 [exp] 236 / 7e-79 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10026035 pacid=23173084 polypeptide=Lus10026035 locus=Lus10026035.g ID=Lus10026035.BGIv1.0 annot-version=v1.0 ATGGGAAAAGGTGGCGGCTGCGTTCCTAGCAAGAAAAAACACCCTCCAGTGGCCGATAACCCTCCACAACAGCCGCCACCCTCAATCGACGCCACCACCA CCATCACCGGCGAAAACCACGCGACCACAGTCGAATCGGCGGCTTCCTCCGCGAAATTGAAGGTGTTCGTCGTTTTCTACTCGATGTACGGCCACGTGGA GTTGCTGGCCCGGAGGATGAAGAAGGGCGTTGAAGGAGTCGAAGGGGTGGATGCTGTGCTGTATCGGGTCCCAGAGACGCTTCCTGCGGAGGTTCTGGAC CAGATGAAGGCGCCGCCGAAGGACATTTCGATTCCCGAGATAACGGCGGCGGAGTTGGTGGAGGCGGATGCCATTCTGTTTGGGTTCCCGACAAGGTATG GGTCAATGGCGGCGCAGATGCAGTCTTTTTTCGATTCCACGGGTCAGCTGTGGAACGAGCAGAAGCTGGCCGGGAAGCCGGCTGGGTTTTTTGTTAGTAC CGGAACCCAAGGCGGCGGTCAAGAAACGACGGCATGGACAGCAATAACTCAGTTGGTTCACCATGGAATGCTATTTGTTCCTGTGGGCTACAAGTTTGGT GCTGGTATGTTCAAGATGGATTCTATCAGAGGCGGATCTCCGTATGGTGCTGGAGTTTATGCTAGCGATGGTTCTAGACAACCAAGCGAGATGGAGCTAG CACTTGCAGAGCATCAGGGCAACTATATGGCAACAATAGTCAAGAAGTTCGCTCATTCTTGA
AA sequence Show only first row Show all	>Lus10026035 pacid=23173084 polypeptide=Lus10026035 locus=Lus10026035.g ID=Lus10026035.BGIv1.0 annot-version=v1.0 MGKGGGCVPSKKKHPPVADNPPQQPPPSIDATTTITGENHATTVESAASSAKLKVFVVFYSMYGHVELLARRMKKGVEGVEGVDAVLYRVPETLPAEVLD QMKAPPKDISIPEITAAELVEADAILFGFPTRYGSMAAQMQSFFDSTGQLWNEQKLAGKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPVGYKFG AGMFKMDSIRGGSPYGAGVYASDGSRQPSEMELALAEHQGNYMATIVKKFAHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	0	1
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	4.6	0.9080
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	6.0	0.8832
AT3G44150			unknown protein		Lus10029366 [exp]	7.5	0.9064
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	8.8	0.8938
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	9.0	0.9020
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	10.5	0.8987
AT5G10660			calmodulin-binding protein-rel...		Lus10026227 [exp]	11.4	0.8042
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	14.4	0.8858
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	15.2	0.8988
AT1G01225			NC domain-containing protein-r...		Lus10030231 [exp]	16.3	0.8440

Compare expression of checked genes

Lus10026035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.