Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75080 282 / 5e-94 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT1G19350 261 / 7e-86 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 231 / 5e-75 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT4G36780 177 / 3e-54 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT4G18890 135 / 1e-37 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT1G78700 132 / 6e-36 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT5G45300 64 / 6e-11 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 53 / 1e-07 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014327 [exp] 448 / 4e-160 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014326 [exp] 363 / 1e-127 AT1G75080 207 / 7e-66 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 231 / 3e-74 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 185 / 2e-56 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10005419 [exp] 135 / 4e-37 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 134 / 1e-36 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10007319 [exp] 130 / 4e-35 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10029270 [exp] 126 / 2e-33 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10035679 [exp] 64 / 3e-11 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126400 [exp] 310 / 2e-105 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.007G030700 [exp] 304 / 4e-103 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 257 / 1e-84 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 241 / 3e-78 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.011G106800 [exp] 144 / 1e-40 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 138 / 2e-38 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 137 / 5e-38 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 134 / 8e-37 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.004G062400 [exp] 133 / 2e-36 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.016G125700 [exp] 78 / 3e-17 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10026036 pacid=23173232 polypeptide=Lus10026036 locus=Lus10026036.g ID=Lus10026036.BGIv1.0 annot-version=v1.0 ATGACGGGCGGCGGTGGTGGATCGTCGGGGAGACTACCGTCATGGAAGGAAAGAGAGAACAACATGAGAAGGGAGAGAAGGAGAAGAGCCATCGCTGCTA AGATTTACACCGGCCTCCGATCTCAGGGCAACTTCAAGCTCCCCAAACACTGCGACAACAACGAGGTCCTTAAAGCCCTCTGTGCCGAGGCTGGTTGGAT CGTTGAAGAAGACGGTACTACTTACCGCAAGGGGTGCAAGCCGCTGCCTGGTGAAATTGCAGGAACTCCACTAAGCTTTAGCGGAGGTTCATCCATTCAG CCAAGTCCACAAACTTCAAACTTCCAAAGTCCGGTGATTTCCTACCAAGCTAGCCCAACATCATCATCATTCCCGAGTCCTTCTCGTTTTGAAGCCAACC CATCAGCGTACCTCCTTCCTTTACTCCGAAACATAGCTTCAATCCCCCCAAACTTGCCTCCTCTTAGGATATCCAACAGTGCCCCAGTAACTCCTCCGCT CTCTTCTCCCACCAGAACTTCCAATGCATCATCCCTTGCTAACAATGCATCTATAGTCAACTCCTTCAACCATCAGATCTTTGCAGCCTCCGCGCCTTCT AGTCCTGCCAGGCGCCACCACTACTTCCAACCCATACCCGAATGCGACGAATCTGATGGCTCCATTATCGATTCTGGCGGGTGGTTATCTTTCCAAGGTG TTCCTTCTTCCCAAACGATCCCCGTTTCCCCGACTTTCAACCTCGTTAGACCCATGGTGGGAGTGAAAGTAAATGCTGCTGCGAGTGGAGCTGACAATGT GAGAAGCTCTGAGTTCGAGTTCGAGAATAGAAAGGTTAAGCCTTGGGAAGGCGAGCGGATACACGAGATGGGCGCGGATGATCTCGAACTCACGCTTGCA AGCGGAAAGGCACGGGGCTAG
AA sequence Show only first row Show all	>Lus10026036 pacid=23173232 polypeptide=Lus10026036 locus=Lus10026036.g ID=Lus10026036.BGIv1.0 annot-version=v1.0 MTGGGGGSSGRLPSWKERENNMRRERRRRAIAAKIYTGLRSQGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPLPGEIAGTPLSFSGGSSIQ PSPQTSNFQSPVISYQASPTSSSFPSPSRFEANPSAYLLPLLRNIASIPPNLPPLRISNSAPVTPPLSSPTRTSNASSLANNASIVNSFNHQIFAASAPS SPARRHHYFQPIPECDESDGSIIDSGGWLSFQGVPSSQTIPVSPTFNLVRPMVGVKVNAAASGADNVRSSEFEFENRKVKPWEGERIHEMGADDLELTLA SGKARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	3.7	0.9547
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	5.2	0.9229
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	6.6	0.9335
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029889 [exp]	7.1	0.8976
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	8.3	0.8913
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	9.9	0.9361
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	11.9	0.8909
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	12.2	0.9387
AT1G75060			unknown protein		Lus10028777 [exp]	12.8	0.8961
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	16.6	0.9225

Compare expression of checked genes

Lus10026036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.