Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36800 341 / 1e-121 RCE1 RUB1 conjugating enzyme 1 (.1.2) AT2G18600 321 / 9e-114 Ubiquitin-conjugating enzyme family protein (.1) AT5G56150 101 / 9e-28 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT5G53300 101 / 1e-27 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 100 / 2e-27 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 100 / 3e-27 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 100 / 6e-27 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 99 / 1e-26 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 98 / 2e-26 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08700 92 / 4e-24 UBC12 ubiquitin-conjugating enzyme 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014329 [exp] 374 / 6e-134 AT4G36800 332 / 3e-117 RUB1 conjugating enzyme 1 (.1.2) Lus10010143 [exp] 265 / 8e-92 AT4G36800 257 / 1e-88 RUB1 conjugating enzyme 1 (.1.2) Lus10028700 [exp] 105 / 4e-29 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 105 / 4e-29 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027846 [exp] 100 / 6e-27 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 97 / 6e-26 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 97 / 6e-26 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 97 / 7e-26 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10022726 [exp] 97 / 1e-25 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030900 [exp] 362 / 5e-130 AT4G36800 340 / 2e-121 RUB1 conjugating enzyme 1 (.1.2) Potri.005G126500 [exp] 346 / 1e-123 AT4G36800 332 / 3e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.T125904 [exp] 338 / 1e-120 AT4G36800 332 / 5e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.009G113045 [exp] 338 / 1e-120 AT4G36800 332 / 5e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.014G041532 [exp] 139 / 1e-42 AT4G36800 137 / 5e-42 RUB1 conjugating enzyme 1 (.1.2) Potri.014G041466 [exp] 112 / 1e-32 AT2G18600 104 / 3e-30 Ubiquitin-conjugating enzyme family protein (.1) Potri.004G175000 [exp] 100 / 2e-27 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 99 / 2e-26 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 99 / 2e-26 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 99 / 2e-26 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10026038 pacid=23173272 polypeptide=Lus10026038 locus=Lus10026038.g ID=Lus10026038.BGIv1.0 annot-version=v1.0 ATGATTCGTTTGTTTAAAGTTAAGGAACAGCAGAGGGAACAAGCTGAGAATGCCAACGGAGGAATGCCAGTTAAAAAGCAAAGTGCTGGAGAGCTTCGGC TTCACAAGGATATCTCCGAGCTGAACCTTCCCAAGTCATGTGCCATTACGTTCCCCAATGGCAAAGACGACCTGATGAACTTTGAGGTCTCGATTCGACC AGATGAAGGGTATTATGCAGGTGGAACGTTTTTATTCACTTTCCAAGTCTCTCCTATCTATCCGCACGAGGCACCGAAAGTTAAATGCAAGACAAAGGTG TACCATCCAAACATCGACTTAGAGGGGAATGTTTGTCTTAACATATTGCGAGAAGACTGGAAGCCAGTTCTTAACATCAATACTATTATCTACGGACTAT ATCATCTGTTTACGGAGCCGAACTACGAGGATCCTCTGAATCACGAAGCGGCTGCTGTGTTGAGGGATCACCCAAAGATGTTCGAATCAAACGTGAGGAG GGCGATGACAGGAGGCTATGTCGGGCAGACTTATTTTACGCGTTGTATCTAG
AA sequence Show only first row Show all	>Lus10026038 pacid=23173272 polypeptide=Lus10026038 locus=Lus10026038.g ID=Lus10026038.BGIv1.0 annot-version=v1.0 MIRLFKVKEQQREQAENANGGMPVKKQSAGELRLHKDISELNLPKSCAITFPNGKDDLMNFEVSIRPDEGYYAGGTFLFTFQVSPIYPHEAPKVKCKTKV YHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNYEDPLNHEAAAVLRDHPKMFESNVRRAMTGGYVGQTYFTRCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	0	1
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	2.4	0.9182
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	2.8	0.9200
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	3.5	0.9330
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	5.7	0.9132
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	5.9	0.9082
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	7.1	0.9037
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	7.2	0.8732
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	8.9	0.9069
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	9.5	0.9113
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	10.1	0.8735

Compare expression of checked genes

Lus10026038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.