Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66680 642 / 0 DGL1 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014330 [exp] 783 / 0 AT5G66680 705 / 0.0 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1) Lus10009792 [exp] 103 / 8e-27 AT5G66680 83 / 6e-20 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127000 [exp] 667 / 0 AT5G66680 622 / 0.0 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1) Potri.007G031000 [exp] 667 / 0 AT5G66680 602 / 0.0 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1) Potri.004G157900 [exp] 109 / 8e-29 AT5G66680 97 / 1e-24 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1) Potri.T125804 [exp] 60 / 1e-11 ND / Potri.009G112922 [exp] 60 / 1e-11 ND / Potri.004G151050 [exp] 59 / 1e-10 AT5G66680 62 / 4e-12 DEFECTIVE GLYCOSYLATION, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03345 [flax] [poplar] DDOST_48kD Oligosaccharyltransferase 48 kDa subunit beta
Representative CDS sequence Show only first row Show all	>Lus10026039 pacid=23173102 polypeptide=Lus10026039 locus=Lus10026039.g ID=Lus10026039.BGIv1.0 annot-version=v1.0 ATGGCGAAACTCGCGATCTTCTTCTCCCTGACACTCTTGCTCCTCCCCCTCCTCTCGCGATCATTCTCGCCGGAGTCCCCAAATGACCGCCGGATCTTGG TTTTGCTCGATGATTTCTCCCTCAAATCTTCTCACTCCATCTATTTCGCCTCCCTCAAGGCCCGCGGCTTCGATCTCGATTTCAAGCTCGCCGATGACCC CAAGCTAGCCCTCCAGAGGTACGGCCAGTACCTGTACGATGGCTTGATTATGTTCGCTCCTTCAGTTGAGAGGTTTGGAGGTGCACTGGATGTGGCAGCT GTTCTTGACTTCGTTGACTCGGGTCATGATTTGATTATAGCAGCGGATACTTCTGCTTCTGATTTGATTAAGAACATCGCGACCGAATGTGGAGTTGATT TCGATGAGGAGCCATCAGCTATGGTTATTGATCACCAAAGCTATGCAGTGTCCAAAATTGATGGTGACCACACCCTCATTGCAGCTGATGAATTCATCAA ATCTGATGTGATCCTTGGAAAGACTAAGATCGAGGCTCCTGTGCTCTTTAAAGGTATAGCACATTCTTTGAATGCAGCAAACACTCTGGCATTGAAAGTT CTTTCTGCTTCTTCATCGGCATACTCAGCTAACCCAAATTCCAAGCTGTCAAGTCCTCCATCACTGACTGGATCTACAATCTCGTTGGTGTCGGTTGTGC AGGCAAGGAACAATGCTCGCATTATGATAACAGGATCTTTGGATATGCTCAGCGATAGGTATATGAAATCAAGTGTGCAGAAAGCAGGGAGTCCTATAAG TTATGAGAAATCTGGCAATGAGCAGTTTGTGACTGAAGTTAGCAAATGGCTTTTCCACGAGAGAGGTCACTTGAAGGCTGGTATTATCAGACACAACAAA GTTGGGGAGACTGGTGAACCTGCAATGTACAGAATTAAAGACGATCTTGAATTCTATGTCGAAATATACGAGTGGTCCGGGAAAAGCTGGGAACCATATG TAGCCAGTGATGTTCAGGTCCAGTTTTATATGATGAGCCCTTACGTGTTGAAGAACCTATCAACTGACAAGAAGGGTCTGTACCACACATCATTTAAGGT GCCTGATGTTTATGGAGTGTTTCAATTCAAGGTTGAGTACCAGAAGCTTGGGTACACTAGTTTGTCACTTTCTAAACAGATTCCTGTGCGCCCATATAGA CACAACGAGTATGAGAGATTCATCACAACTGCCTTTCCATACTACGGAGCTTCCTTTGCTACGATGGCTGGGTTCTTTATCTTCAGCGTGGTCTATCTCT ACAACAAGTAA
AA sequence Show only first row Show all	>Lus10026039 pacid=23173102 polypeptide=Lus10026039 locus=Lus10026039.g ID=Lus10026039.BGIv1.0 annot-version=v1.0 MAKLAIFFSLTLLLLPLLSRSFSPESPNDRRILVLLDDFSLKSSHSIYFASLKARGFDLDFKLADDPKLALQRYGQYLYDGLIMFAPSVERFGGALDVAA VLDFVDSGHDLIIAADTSASDLIKNIATECGVDFDEEPSAMVIDHQSYAVSKIDGDHTLIAADEFIKSDVILGKTKIEAPVLFKGIAHSLNAANTLALKV LSASSSAYSANPNSKLSSPPSLTGSTISLVSVVQARNNARIMITGSLDMLSDRYMKSSVQKAGSPISYEKSGNEQFVTEVSKWLFHERGHLKAGIIRHNK VGETGEPAMYRIKDDLEFYVEIYEWSGKSWEPYVASDVQVQFYMMSPYVLKNLSTDKKGLYHTSFKVPDVYGVFQFKVEYQKLGYTSLSLSKQIPVRPYR HNEYERFITTAFPYYGASFATMAGFFIFSVVYLYNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	0	1
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	1.7	0.9599
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	3.7	0.9560
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	3.7	0.9372
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	3.9	0.9513
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	4.0	0.9450
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021832 [exp]	4.1	0.9268
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	6.3	0.9397
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	6.7	0.9348
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	7.2	0.9312
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	9.2	0.9384

Compare expression of checked genes

Lus10026039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.