Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39910 481 / 9e-172 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 478 / 1e-170 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT5G57990 83 / 2e-17 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 80 / 3e-16 UBP17 ubiquitin-specific protease 17 (.1) AT3G14400 71 / 3e-13 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 68 / 3e-12 UBP16 ubiquitin-specific protease 16 (.1) AT4G31670 66 / 9e-12 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 65 / 2e-11 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 65 / 2e-11 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G04860 64 / 4e-11 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014333 [exp] 551 / 0 AT4G39910 643 / 0.0 ubiquitin-specific protease 3 (.1) Lus10041705 [exp] 540 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 540 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10036607 [exp] 79 / 7e-16 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 79 / 1e-15 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 76 / 7e-15 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10009273 [exp] 76 / 8e-15 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10032623 [exp] 72 / 1e-13 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10029686 [exp] 69 / 2e-12 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093600 [exp] 530 / 0 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 528 / 0 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.006G185200 [exp] 88 / 5e-19 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G107500 [exp] 87 / 2e-18 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.005G156900 [exp] 75 / 2e-14 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G142000 [exp] 73 / 5e-14 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.003G092400 [exp] 73 / 7e-14 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.002G104800 [exp] 73 / 8e-14 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.017G055600 [exp] 71 / 2e-13 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.011G112800 [exp] 71 / 3e-13 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10026041 pacid=23173209 polypeptide=Lus10026041 locus=Lus10026041.g ID=Lus10026041.BGIv1.0 annot-version=v1.0 ATGGGGGCCGCTGGTTCGAAACTAGAGAAAGCTCTCGGTGATCAGTTCCCTGAAGGCGAGCGATACTTCGGCCTCGAGAATTTCGGCAACACTTGCTACT GCAACAGCGTCTTGCAGGCTCTATACTTTTGCGTGTCATTTCGGGAACAATTGCTTGAATATTATGCAAATAATAAGTCCATTGGAGATGCAGAAGAGAA TCTCTTAACATGTTTGGCCGACTTATTTACGCAGATAACCGCACAGAAGAAGAAAACTGGTGTCATAGCACCCAAGCGTTTTGTACAGAGATTGAAAAAA CAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAATTCTTGAATTTTTTGCTCAATGAACTCGTTGACATACTGGAGAAAGAGGCCAAAG CTGTTAAAAGCAACGCAGAAACGTCACTTCCATCTGAAAAGACTGCAAATGGCCCAAGAAGTGCTCTGCCAAATGGCATATCAAAGGAGCCTTTAGTTAC TTGGGTGCACAAGAATTTCCAGGGAATACTTACGAATGAGACCAGGTGTCTGCAGTGTGAAACGGTGACAGCTAGAGATGAAACGTTCTTCGACTTGAGC CTTGATATTGAACAGAACAGTTCCATAACCAGCTGTTTGAAAAATTTCAGTTCAACAGAAACTCTGAATGCAGAAGATAAATTTTTCTGTGACAAGTGTT GCAGGCAAGTTATTGACTTGCTGCTATTTGGCATTGACTTGACTTTCAATGGATTTTCTTTCTTCAGCATTGTACGGGCCGAACCACGGGCACTACGTCA GTCTCGTGAAAAGCCACAATCACTGGCTGGGGGGGGAAGACACAATCACTGGCTGTTCTTCGACGACGAAAATGTCGAGATGATTGATGAGTCTGCTGTC CAGACATTCTTTGGCTCACCGCAAGAATATTCTAGTAACACCGATCACGGGTATATCTTGTTCTACGAGAGCATCACTGCTAACAAGAGCTGA
AA sequence Show only first row Show all	>Lus10026041 pacid=23173209 polypeptide=Lus10026041 locus=Lus10026041.g ID=Lus10026041.BGIv1.0 annot-version=v1.0 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVSFREQLLEYYANNKSIGDAEENLLTCLADLFTQITAQKKKTGVIAPKRFVQRLKK QNELFRSYMHQDAHEFLNFLLNELVDILEKEAKAVKSNAETSLPSEKTANGPRSALPNGISKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLS LDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRQVIDLLLFGIDLTFNGFSFFSIVRAEPRALRQSREKPQSLAGGGRHNHWLFFDDENVEMIDESAV QTFFGSPQEYSSNTDHGYILFYESITANKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	0	1
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	4.9	0.9345
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	5.3	0.9403
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	6.3	0.9394
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	6.7	0.9378
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	7.7	0.9364
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	8.5	0.9208
AT5G41810			unknown protein		Lus10001907 [exp]	9.6	0.9365
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	13.5	0.9052
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	14.5	0.9034
AT3G46540			ENTH/VHS family protein (.1)		Lus10016556 [exp]	16.4	0.9049

Compare expression of checked genes

Lus10026041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.