Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64970 475 / 3e-166 Mitochondrial substrate carrier family protein (.1) AT1G78180 402 / 1e-137 Mitochondrial substrate carrier family protein (.1) AT4G32400 153 / 1e-41 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 142 / 3e-38 Mitochondrial substrate carrier family protein (.1) AT3G53940 141 / 9e-38 Mitochondrial substrate carrier family protein (.1) AT2G37890 139 / 4e-37 Mitochondrial substrate carrier family protein (.1) AT5G51050 138 / 1e-35 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G51870 129 / 4e-33 Mitochondrial substrate carrier family protein (.1) AT4G01100 128 / 4e-33 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G01500 128 / 1e-32 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014334 [exp] 766 / 0 AT5G64970 499 / 7e-174 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 149 / 4e-40 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 147 / 1e-39 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 147 / 1e-39 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 147 / 1e-39 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 140 / 1e-36 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 134 / 1e-34 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 134 / 3e-34 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 132 / 1e-33 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093300 [exp] 541 / 0 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.005G165200 [exp] 488 / 6e-171 AT5G64970 499 / 6e-176 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 153 / 6e-42 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 150 / 6e-41 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 138 / 1e-36 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 134 / 2e-35 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 130 / 7e-34 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.016G115400 [exp] 131 / 1e-33 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.006G099800 [exp] 130 / 1e-33 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.010G197400 [exp] 129 / 2e-33 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10026043 pacid=23173283 polypeptide=Lus10026043 locus=Lus10026043.g ID=Lus10026043.BGIv1.0 annot-version=v1.0 ATGTACGGCAGCCAGGATCTAATTTTCCCCAATCTAATCAAGCTCCAACACTCTGATCTCTCATCATCCTCTTCTTCTTCCTCCTCCTACCTCGTTGGCG GCATCTTCCTCGACCACGATACCGTCTTCCCTTCCTTCTTTTCACTGAAACCTAACAAGTCCAATTCATCTCACTATTCTGGCCTTTCGAGGAATGTGAG GCTTCAAGTTAATGACCGCCGCCGGCGTCAGCAGCCGCGGCGTTTGGGGAGAAATGGAGTTGCGTTTCTCTCCGTTAGTTTGTCGATAAAACCAGATGAT GATGAGAAGAATTTGGAGGAGGAGGAGAGTGTTGGAACGTTTCTGAATACTGAATTTGAGAAAGGGAATGAGAAGAAGAAGAACAATGTTGTTACTGAGA GGAAACCGGGATCTGCGGCTTTCAATACCACCAAGCATCTCTGGGCAGGCGCTGTTGCCGCCATGGTTTCAAGAATTGATTTTGTGGATATATACATGGT TGACCGAAACTCTCAACTCGGTTGTCATAACTCAAATTTGTTCGTTCTGCTTTCTGGAAACAGAACCATAATAGCGCCTTTGGAGAGATTGAAGCTGGAG TACATAGTTTGTGGTGAGAAGAAGCATCTATTTGAACTCAGCAGGAAAATTTTCGAAACTCAAGGGGTCAAAGGTTTTTGGAAAGGGAACTTGGTCAATA TCCTTCGAACTGCTCCCTTTAAAGCTATCAACTTTTATGCGTATGACACATACAGAACGATGCTACGCAAGTGGACTGGGAATGAGGAAGCAACGAATCT CGAGAGGTTTGTTGCCGGCGCTGCAGCTGGTGTTACTGCTTCTTTGCTCTGCTTGCCTTTGGACACTATAAGGACGAAAATGGTAGCACCTGGTGGCGAT GCATTGGGTGGTGTAATAGGAACCTTCCGTCACATGGTCCAGTCTGAAGGGTTCTTATCACTTTATAAGGGCTTAGTGCCCTCATTAGCAAGCATGGCTC CTGCAGGTGCGGTGTTTTATGGGGTTTATGATATACTGAAAACAGGCTATCTTCATTCACCCGAGGGGCTGGCAAGAATTCAAAACATGAAACAAGAAGG GCAGGATTTGAATGCCTTTGACCAACTGGAGCTGGGTCCTGTTAGAACACTGCTTTATGGGGCGATAGCAGGCTGTTGTTCTGAGGCTGCTACTTATCCA TTTGAAGTTGTCAGGAGAAATCTTCAAATGCAAGTCCGAGCCACAAAGATGAACGCGGTAGCAACTTGTTTCAAGATAGTTGAACAAGGAGGGGTTCCTG CTCTATATGTCGGATTAATACCAAGCTTGTTACAGGTCTTACCATCGGCTGGAATAAGTTACTTTGTGTACGAGTTCATGAAGATAGTACTGAAAGTTGA GTCTTCTTCATAG
AA sequence Show only first row Show all	>Lus10026043 pacid=23173283 polypeptide=Lus10026043 locus=Lus10026043.g ID=Lus10026043.BGIv1.0 annot-version=v1.0 MYGSQDLIFPNLIKLQHSDLSSSSSSSSSYLVGGIFLDHDTVFPSFFSLKPNKSNSSHYSGLSRNVRLQVNDRRRRQQPRRLGRNGVAFLSVSLSIKPDD DEKNLEEEESVGTFLNTEFEKGNEKKKNNVVTERKPGSAAFNTTKHLWAGAVAAMVSRIDFVDIYMVDRNSQLGCHNSNLFVLLSGNRTIIAPLERLKLE YIVCGEKKHLFELSRKIFETQGVKGFWKGNLVNILRTAPFKAINFYAYDTYRTMLRKWTGNEEATNLERFVAGAAAGVTASLLCLPLDTIRTKMVAPGGD ALGGVIGTFRHMVQSEGFLSLYKGLVPSLASMAPAGAVFYGVYDILKTGYLHSPEGLARIQNMKQEGQDLNAFDQLELGPVRTLLYGAIAGCCSEAATYP FEVVRRNLQMQVRATKMNAVATCFKIVEQGGVPALYVGLIPSLLQVLPSAGISYFVYEFMKIVLKVESSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	0	1
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	3.0	0.8928
AT4G01400			unknown protein		Lus10030195 [exp]	3.2	0.9040
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	3.7	0.8932
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	6.6	0.8917
AT3G50790			esterase/lipase/thioesterase f...		Lus10017332 [exp]	7.3	0.8211
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	8.4	0.8676
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	8.4	0.8893
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	8.5	0.8695
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	11.5	0.8779
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	12.0	0.8744

Compare expression of checked genes

Lus10026043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.