Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10260 209 / 5e-70 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 169 / 6e-54 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT2G44610 148 / 6e-46 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 129 / 2e-38 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 109 / 9e-31 AtRABH1a RAB GTPase homolog H1A (.1.2) AT2G21880 66 / 6e-14 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT3G16100 64 / 5e-13 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT3G18820 63 / 6e-13 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G49300 63 / 7e-13 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G52280 63 / 7e-13 AtRABG3d RAB GTPase homolog G3D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014336 [exp] 188 / 1e-61 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10024046 [exp] 188 / 9e-61 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1) Lus10041702 [exp] 163 / 1e-51 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10043349 [exp] 146 / 4e-45 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 146 / 4e-45 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019502 [exp] 126 / 3e-38 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10035872 [exp] 64 / 5e-13 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10040468 [exp] 63 / 1e-12 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10028820 [exp] 63 / 1e-12 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075300 [exp] 186 / 7e-61 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.003G086700 [exp] 165 / 1e-52 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 153 / 5e-48 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.001G147900 [exp] 89 / 1e-22 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.001G182900 [exp] 65 / 2e-13 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.002G062400 [exp] 64 / 5e-13 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.004G153400 [exp] 63 / 6e-13 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.009G115000 [exp] 63 / 6e-13 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.003G053400 [exp] 62 / 1e-12 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.005G198800 [exp] 62 / 2e-12 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10026045 pacid=23173292 polypeptide=Lus10026045 locus=Lus10026045.g ID=Lus10026045.BGIv1.0 annot-version=v1.0 ATGGCGACGGTATCCCCTCTCGCCAAGTACAAACTCGTGTTCTTGGGCGATCAGTCGGTCGGAAAAACCAGCATCATCACCCGCTTCATGTATGATAAAT TCGACACCACTTACCAGGCAACGATAGGGATTGATTTCTTGTCAAAAACAATGTATCTTGAAGATCGAACTGTTCGATTGCAACTATGGCAAGTGTCGAT AGAGGAGGGAGACGGCAAGGCTAGAGACTTCGGAGTTATGTTCATTGAGACAAGTGCGAAAGCAGGATTCAACATCAAACCCCTTTTCCGGAAGATTGCT GCTGCCCTGCCAGGAATGGAAACTCTTTCTTCAACGAAACAGGAAGACATGGTAGATGTGAATTTGAAACCCACCGTGAATTCGTCGCAGGCCGAGCAGC AAGGAGGAGGCTGCGCTTGTTAG
AA sequence Show only first row Show all	>Lus10026045 pacid=23173292 polypeptide=Lus10026045 locus=Lus10026045.g ID=Lus10026045.BGIv1.0 annot-version=v1.0 MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWQVSIEEGDGKARDFGVMFIETSAKAGFNIKPLFRKIA AALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQQGGGCAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10026045 [exp]	0	1
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10014336 [exp]	5.5	0.5955
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10026686 [exp]	75.1	0.4961
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	136.0	0.5039
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009002 [exp]	196.8	0.5102

Compare expression of checked genes

Lus10026045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.