Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 639 / 0 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT5G64330 462 / 1e-153 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G67385 340 / 2e-108 Phototropic-responsive NPH3 family protein (.1) AT1G30440 341 / 9e-108 Phototropic-responsive NPH3 family protein (.1) AT1G03010 332 / 1e-104 Phototropic-responsive NPH3 family protein (.1) AT5G03250 322 / 2e-101 Phototropic-responsive NPH3 family protein (.1) AT5G13600 319 / 2e-100 Phototropic-responsive NPH3 family protein (.1) AT2G14820 317 / 3e-99 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT3G44820 311 / 1e-96 Phototropic-responsive NPH3 family protein (.1) AT2G30520 305 / 9e-95 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014337 [exp] 1223 / 0 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 370 / 3e-119 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 366 / 2e-117 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 340 / 8e-108 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 329 / 2e-103 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 322 / 4e-101 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 319 / 7e-100 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 318 / 1e-99 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 318 / 2e-99 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075400 [exp] 854 / 0 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 853 / 0 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 496 / 7e-168 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 496 / 1e-167 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.013G024400 [exp] 373 / 2e-121 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 363 / 5e-117 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 362 / 2e-116 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 360 / 1e-115 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 330 / 3e-104 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 330 / 6e-104 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10026046 pacid=23173189 polypeptide=Lus10026046 locus=Lus10026046.g ID=Lus10026046.BGIv1.0 annot-version=v1.0 ATGGGGGAATCTTTTGCTGCTGCTGCTGCTGGAAGGTGGTGGATTCAGCTTCCTCCTCAAAAAGCCTTCTTCACTATCACAATGAACAAGTCTATTCCTT TCTCCCTCCCTGTTGTTGAAAGCCAAAGCTCCTCTTCAACCAGCAGCGATTCCGACGGCCATCACCAAGTTCCCCAGCAAAGCATCATCCTTCCACCTAG CAGTACCATTGCTGCCGTAGCTGATGCCTTGGAGAAGAATGCTCATAACTGGCCTATAACTCCCCAACTCCCAACAGATCTATCAGTTCAAGTCCAAGAT GCTACTTTCACTGTTCACAAGTTACCTTTGGTGTCGAAATGCGGCTACATAGCACATTTGGAACTCCAGCCTTCAATTTCAAACTTCGGCTATGAAGTGA AGCTGGAAAACTTCCCAGGAGGATCAGAGACATTCGAAGCCGTCTTGAGATTCTGCTACGGCCTCCCTCTAGATTTAAACCCTCAGAACATAGTTCCACT AAGATGCGCATCAGAGTACCTGGAGATGAGTGAAGATCTTGAAGATGGAAACCTCATCACAAAGACAGAAGCTTTCCTCACATTTGTCATTCTCTCTTCA TGGAAAGACACAATCACTGTCCTTCAATCCTGCGAAACGTTATCCCCGTGGGCGGAGAATCTTCAAATCGTCAGAAGATGCTGCGACTCCATTACTTGGA AGGCTTCAAGAGAAAATGATGCAGCTAGTGATCAAGATTCAGCGTGGTGGCTGGATGATGTTGCCACCCTGCATATCAACCATTTCGCGAGGATTATAAC AGCGATAAGGGCGAAAGGAACGAAACCGGAAATTGTTGGAAAGTGTATAATGCAGTATGCATCGAAATGGTTGTCCGGGGTGGATGAGGAACTAAAGGAA CTAAGAGGCTATGTCGGGCAGGGCAAGGGTGAGTTGCAGTTCAGTGTCTTGAGTGGGAGAAAAAAGGAAGATGAGTATGTTGGACACAAGGAGCAGCAGA CGACCATTATTGAGAACCTAATAAGCTTGTTGCCTCCTCAACAAGAAGCTGTGCCATGCAGGTTCCTGTTGCAGATGTTGAATATGGCCACTGTTTATTC TGCATCGCCGGCTTTGATCACACAGCTAGAGAAGAGAGTAGGAATTATACTAGACAAGGCAACGGTGAACGATCTTTTGATCCCTAATTACACAACTACA GATCAAGGGAAGCTACTAAAGTCACCTGACCAAAGCACCATGCACGATATAGACACGGTACAAAGAATTGTGGAGTATTTTTTAATGCATGAACAGGATC AGCAACAAATGCAATCAATACCAGGGAAGGCCAGTGTTAGTAAGCTTCTGGACAATTATCTAGCTGAAATTGCTAAGGATCCAAATGTATCTGTGACCAA ATTTCATGTTTTGGCCGAAGCACTTCCAGAAAGTTCTAGAACTTGTCATGATGGCCTATACAGGGCCATTGACATCTATCTCAAGACTCATCCTTCGCTA TCAGAACATGATCGGAAAAGGGTTTGCAGATTAATGAACTGTGAGAAACTATCCCTAGATGCGTGCATGCACGCAGCACAAAATGATAGGCTGCCAGTAA GAACTGTAATTCAGGTGAAATTGAGGGCAGCAATGCAGAGAAAAGATACACCAGAGAGTGGCAATATTTCGGAACAGGAGGTAGTACACCAAACAGAAAC AAAATCAGAGATCATGATGCTTAAAGCGGAGTTGGAGAATGTAAAGACAAGGATGGCAGAGCTGCAAAAAGACTACTTGGAATTGCAGCATGAGTATGCC AAGTTAAACAACAAGCACAAACATACATTAGCTTGGGGTTGGAAGAAGATTAGGACATCCACTCTCTTCCACCGAAAAGCTGACGAGATTGAAATAGAAG AAGGAAGGCAAAGATCCAATTCCACAAGCCAAAAAGTCAAGTCCGGAAAAGTCAATGGGGTCGAAATTGAGGAAGGAAGGCAAAGATCCAATTCTACAAG TCAAAAACTCAACTCGAGAAGAAGAATGTCCGTATAA
AA sequence Show only first row Show all	>Lus10026046 pacid=23173189 polypeptide=Lus10026046 locus=Lus10026046.g ID=Lus10026046.BGIv1.0 annot-version=v1.0 MGESFAAAAAGRWWIQLPPQKAFFTITMNKSIPFSLPVVESQSSSSTSSDSDGHHQVPQQSIILPPSSTIAAVADALEKNAHNWPITPQLPTDLSVQVQD ATFTVHKLPLVSKCGYIAHLELQPSISNFGYEVKLENFPGGSETFEAVLRFCYGLPLDLNPQNIVPLRCASEYLEMSEDLEDGNLITKTEAFLTFVILSS WKDTITVLQSCETLSPWAENLQIVRRCCDSITWKASRENDAASDQDSAWWLDDVATLHINHFARIITAIRAKGTKPEIVGKCIMQYASKWLSGVDEELKE LRGYVGQGKGELQFSVLSGRKKEDEYVGHKEQQTTIIENLISLLPPQQEAVPCRFLLQMLNMATVYSASPALITQLEKRVGIILDKATVNDLLIPNYTTT DQGKLLKSPDQSTMHDIDTVQRIVEYFLMHEQDQQQMQSIPGKASVSKLLDNYLAEIAKDPNVSVTKFHVLAEALPESSRTCHDGLYRAIDIYLKTHPSL SEHDRKRVCRLMNCEKLSLDACMHAAQNDRLPVRTVIQVKLRAAMQRKDTPESGNISEQEVVHQTETKSEIMMLKAELENVKTRMAELQKDYLELQHEYA KLNNKHKHTLAWGWKKIRTSTLFHRKADEIEIEEGRQRSNSTSQKVKSGKVNGVEIEEGRQRSNSTSQKLNSRRRMSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	0	1
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	1.7	0.9276
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	2.0	0.9058
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10026912 [exp]	2.8	0.8812
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	3.0	0.9053
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	3.2	0.8884
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	3.5	0.8859
					Lus10033476 [exp]	4.0	0.9045
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	5.1	0.8683
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	6.0	0.8699
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	6.0	0.8800

Compare expression of checked genes

Lus10026046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.