Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29090 548 / 0 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G19730 274 / 4e-90 Pectin lyase-like superfamily protein (.1) AT2G21610 233 / 1e-74 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G47500 228 / 1e-72 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36700 221 / 4e-70 Pectin lyase-like superfamily protein (.1) AT2G36710 222 / 1e-69 Pectin lyase-like superfamily protein (.1) AT5G07430 216 / 5e-68 Pectin lyase-like superfamily protein (.1) AT5G07420 210 / 1e-65 Pectin lyase-like superfamily protein (.1) AT3G17060 210 / 1e-65 Pectin lyase-like superfamily protein (.1) AT1G69940 208 / 6e-65 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014338 [exp] 659 / 0 AT3G29090 545 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10041699 [exp] 605 / 0 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10024050 [exp] 310 / 3e-107 AT3G29090 258 / 4e-87 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10012942 [exp] 271 / 5e-89 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 265 / 2e-87 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 263 / 7e-87 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 265 / 1e-86 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 261 / 3e-85 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 243 / 2e-78 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128820 [exp] 599 / 0 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.018G068400 [exp] 283 / 8e-94 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 263 / 2e-86 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.017G087300 [exp] 258 / 4e-86 AT3G29090 271 / 1e-91 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.004G156300 [exp] 250 / 1e-81 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.014G117100 [exp] 241 / 3e-77 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 224 / 4e-71 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 223 / 1e-69 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 220 / 2e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 220 / 2e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10026047 pacid=23173246 polypeptide=Lus10026047 locus=Lus10026047.g ID=Lus10026047.BGIv1.0 annot-version=v1.0 ATGTCGGCAGGGCGAGTAATAACGGTGGCTCAAGATGGCTCCGGCGACTTCACCACCGTCCAGCAAGCAGTGGACGCCGTCCCCTTGGGCAACAACTTCC GGACTCTAATCCGCGTATCCCCCGGAGTTTACAAGCAGCCAGTATATGTTCCCAAGACCAAAAATTTCATTACTTTGGCTGGTTTGCGCCCCGAGGACAC CATCCTTACCTGGAACAACACCGCCACCAAAATCGATCATCACCAGGGAGCTAGGTTGATTGGGACTGGAACGTTTGGCTGTGGGAGTGTGATTGTTGAA GGAGAAGATTTCATTGCTGAGAACATCACTTTCGAGAACTCTGCTCCCCAGGGTTCTGGTCAAGCTGTGGCGCTGAGAGTGACAGCAGATCGTTGCGGTT TCTATAATTGCAGGTTTCTGGGGTGGCAGGATACACTGTATTTACACTATGGGAAACAGTATCTCAAGGATTGCTACATTGAAGGAAGTGTGGACTTCAT TTTCGGGAATAGTACTGCTCTACTCGAACATTGTCATATCCACTGTAAATCAGAAGGGTTTATAACTGCCCAAGGCCGCAAGTCTTCTCAAGAGTCAACG GGCTATGTGTTCTTGAGATGTGTGATCACTGGAAATGGAAAAGCATCATATACGTATCTCGGGCGACCATGGGGGCCGTTTGGAAGGGTAGTTTTTGCAT ACACTTATATGGATCATTGCATCAGACACGTGGGGTGGAATAATTGGGGCAAATCAGAGAACGAAAGAAGTGCTTGCTTTTATGAGTACAGGTGTTATGG TCCAGGTAGTTGTCCATCGAAACGAGTCGGGTGGTGTAGAGAATTGATAGACGAAGAAGCAGACCAATTCGTCATGCATGGATTCATTGATCCAAACCCA GAAAGGCCATGGCTTGCCCAAAGAATGGCAGTGAGGATACCGCATTCTGCCTAG
AA sequence Show only first row Show all	>Lus10026047 pacid=23173246 polypeptide=Lus10026047 locus=Lus10026047.g ID=Lus10026047.BGIv1.0 annot-version=v1.0 MSAGRVITVAQDGSGDFTTVQQAVDAVPLGNNFRTLIRVSPGVYKQPVYVPKTKNFITLAGLRPEDTILTWNNTATKIDHHQGARLIGTGTFGCGSVIVE GEDFIAENITFENSAPQGSGQAVALRVTADRCGFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSQEST GYVFLRCVITGNGKASYTYLGRPWGPFGRVVFAYTYMDHCIRHVGWNNWGKSENERSACFYEYRCYGPGSCPSKRVGWCRELIDEEADQFVMHGFIDPNP ERPWLAQRMAVRIPHSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	1.0	0.8500
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	2.8	0.8059
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	5.5	0.7351
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	6.3	0.7696
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	6.5	0.7281
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	6.6	0.7980
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	6.7	0.7999
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	8.8	0.7675
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	12.3	0.7103
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	12.4	0.7668

Compare expression of checked genes

Lus10026047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.