Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65030 116 / 2e-32 unknown protein AT5G10210 109 / 9e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014339 [exp] 367 / 1e-130 AT5G65030 135 / 7e-40 unknown protein Lus10026049 [exp] 316 / 1e-110 AT5G65030 129 / 3e-37 unknown protein Lus10041692 [exp] 230 / 1e-76 AT5G65030 118 / 4e-33 unknown protein Lus10041694 [exp] 228 / 7e-76 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 228 / 7e-76 AT5G65030 122 / 2e-34 unknown protein Lus10024055 [exp] 225 / 2e-74 AT5G65030 124 / 2e-35 unknown protein Lus10014340 [exp] 165 / 4e-52 AT5G65030 62 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092300 [exp] 173 / 8e-55 AT5G65030 155 / 8e-48 unknown protein Potri.005G076100 [exp] 173 / 1e-54 AT5G65030 154 / 1e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026048 pacid=23173248 polypeptide=Lus10026048 locus=Lus10026048.g ID=Lus10026048.BGIv1.0 annot-version=v1.0 ATGGGTCCATCTTCTTCAAACCATGATCACCTCTCGTGCGAAATAGCGGTCCACCAATCCAAGAACGTCGAGGAGTTCATGATCATGAACAAGTACTACA ACAAGCCCCATGGCAACTTGTTTGTGAGATACTATCTTCCAGCAGGAAACAACAACAACCACAAAATCCAACTCCAGACTAGAGAAATTCCATCAAGGTC GTCTACAAGTGATGATCATCTTTCTTGGAACGAGTCCTTCTCATTGGATTGCTTAAGCAACCAAGACTCGCTCAACGCCCTCAAGACGAGTAGCGTGGTC TTCGAGTTGAGATGGAGACCATCCTCAACGCGAACCAACATCCTTGGCCGAGTTGCAGGTTCTAAGCTTGTGGGTAGAGCTGAGCTTCCATGGGGAAGTG TCATGGAGTCGGCTAGCATGGAGATTGAGAAATGGGTTGTTATGAACCCGAAGAATAGCAAAAGATGTGATGGTGTTAAGCCTCCTTCGGTGAAGATCGG GATGAGGGTTCGAGTCCCGAAATCAATAGCGATCGAGATGAAAAAGAATAATTATAAGAGCGACGAGAAGAGTTATGAGTGCGGGTGTAGTTGTAGTAGT AGCTATCATTCTTGTGCTGATTATGATGTCCTTGCGCTTGTAGCTGCTTTTGAAGCAGTATAA
AA sequence Show only first row Show all	>Lus10026048 pacid=23173248 polypeptide=Lus10026048 locus=Lus10026048.g ID=Lus10026048.BGIv1.0 annot-version=v1.0 MGPSSSNHDHLSCEIAVHQSKNVEEFMIMNKYYNKPHGNLFVRYYLPAGNNNNHKIQLQTREIPSRSSTSDDHLSWNESFSLDCLSNQDSLNALKTSSVV FELRWRPSSTRTNILGRVAGSKLVGRAELPWGSVMESASMEIEKWVVMNPKNSKRCDGVKPPSVKIGMRVRVPKSIAIEMKKNNYKSDEKSYECGCSCSS SYHSCADYDVLALVAAFEAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65030			unknown protein		Lus10026048 [exp]	0	1
					Lus10018816 [exp]	1.4	0.9670
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	3.2	0.9624
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	9.9	0.9535
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	14.0	0.9422
AT2G14095			unknown protein		Lus10025500 [exp]	17.5	0.9278
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	19.7	0.8908
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	21.0	0.8956
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	22.6	0.9408
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	22.8	0.9121
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	23.2	0.9337

Compare expression of checked genes

Lus10026048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.