Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65030 129 / 3e-37 unknown protein AT5G10210 117 / 1e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014339 [exp] 353 / 2e-125 AT5G65030 135 / 7e-40 unknown protein Lus10026048 [exp] 316 / 1e-110 AT5G65030 129 / 3e-37 unknown protein Lus10041692 [exp] 251 / 6e-85 AT5G65030 118 / 4e-33 unknown protein Lus10041694 [exp] 249 / 6e-84 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 249 / 6e-84 AT5G65030 122 / 2e-34 unknown protein Lus10024055 [exp] 243 / 2e-81 AT5G65030 124 / 2e-35 unknown protein Lus10014340 [exp] 184 / 1e-59 AT5G65030 62 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092300 [exp] 191 / 2e-61 AT5G65030 155 / 8e-48 unknown protein Potri.005G076100 [exp] 184 / 1e-58 AT5G65030 154 / 1e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026049 pacid=23173242 polypeptide=Lus10026049 locus=Lus10026049.g ID=Lus10026049.BGIv1.0 annot-version=v1.0 ATGGGTCCATCTTCCTCCTACGATCATCAACAACAAATCTCGTGTGAGATAGCGATCCACCAATCCAAGAACGCCGAGGAGTTCATGATCATGAACAAGT ACTACAACAAGCCTCATGGAAACTTGTTTGTTAGATACTGTCTATCAGCGGGAAACAACAACAGCAACAAAATCCAGCTCCAGACTAGAGAAGTCCCATC AACCAGTGCTAATGATGATCGTCTTTCTTGGAACGAGTCCTTCTCATTGGATTGCTTAGGAAACCAAGACTCCTTCAACAATCTCAAGACGAGTAGCGTG GTCTTCGAATTGAGATGGAGATCCTCGGGGCGAACCAACATCCTTGGTCGGGCGACAGGTTCTAAGCTTGTGGGTAGAGCTGAGCTTTCGTGGGAAAGCG TCATGGAGTCACCTAGCATGGAGATTGAGAAATGGGTGGTTATGAACCCAAAGAATAGCAAGAGATGTGATGGTGTTAAGCCTCCGTCGGTGAAGATTGG AATGAAAGTTAGGGTTTCGACATTAATAGAGATTGGGACGAAGGAGAATCATAATAGTGAGAAGGGTTACGAGTGCGGGTGTAGTTGTAGACATAGTAGC TATCATTCTTGTGCTGATTATGATGTTCTTGCCCTGGTGGCCGCTTTCGAAGCAATATAA
AA sequence Show only first row Show all	>Lus10026049 pacid=23173242 polypeptide=Lus10026049 locus=Lus10026049.g ID=Lus10026049.BGIv1.0 annot-version=v1.0 MGPSSSYDHQQQISCEIAIHQSKNAEEFMIMNKYYNKPHGNLFVRYCLSAGNNNSNKIQLQTREVPSTSANDDRLSWNESFSLDCLGNQDSFNNLKTSSV VFELRWRSSGRTNILGRATGSKLVGRAELSWESVMESPSMEIEKWVVMNPKNSKRCDGVKPPSVKIGMKVRVSTLIEIGTKENHNSEKGYECGCSCRHSS YHSCADYDVLALVAAFEAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65030			unknown protein		Lus10026049 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	3.6	0.9726
					Lus10015413 [exp]	4.0	0.9682
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	5.5	0.9679
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	6.6	0.9560
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	6.9	0.9649
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	7.3	0.9632
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	8.2	0.9587
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	8.8	0.9618
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	9.2	0.9494
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	13.0	0.9568

Compare expression of checked genes

Lus10026049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.