Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 278 / 2e-87 unknown protein AT2G12400 272 / 2e-85 unknown protein AT1G80540 245 / 4e-75 unknown protein AT1G71110 237 / 8e-72 unknown protein AT5G67550 56 / 4e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014341 [exp] 758 / 0 AT2G25270 352 / 7e-116 unknown protein Lus10001945 [exp] 293 / 2e-93 AT2G25270 650 / 0.0 unknown protein Lus10008813 [exp] 273 / 1e-85 AT2G12400 616 / 0.0 unknown protein Lus10008028 [exp] 271 / 5e-85 AT2G12400 641 / 0.0 unknown protein Lus10013492 [exp] 218 / 2e-64 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 197 / 1e-56 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 194 / 7e-56 AT1G71110 578 / 0.0 unknown protein Lus10001929 [exp] 185 / 2e-52 AT2G25270 457 / 3e-156 unknown protein Lus10038102 [exp] 128 / 5e-32 AT2G25270 468 / 5e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120200 [exp] 287 / 4e-91 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 284 / 5e-90 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 268 / 1e-83 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 260 / 7e-81 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 224 / 5e-67 AT1G71110 646 / 0.0 unknown protein Potri.017G023400 [exp] 73 / 1e-13 AT5G67550 182 / 3e-51 unknown protein Potri.007G132601 [exp] 69 / 2e-12 AT5G67550 189 / 8e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026050 pacid=23173130 polypeptide=Lus10026050 locus=Lus10026050.g ID=Lus10026050.BGIv1.0 annot-version=v1.0 ATGCAACAAGAATACAAGGAGAGCAAACTTGGGATAACGAACGTAACGTTAGCGGCGGAGAGGACAAGGAGGAGGGACCCACTTGACGGATGCCGTTACT ATACAGGTGGATGGAATTACAAAGACAAGCATTACTGGGCCTCAGTCGTGTTCGCCGCGTTGCCGTTGTTCATCATTGCGGTGGTCTGGTTTCTGTCGTT AGGCGTCTTCCTTTGTTGTGCGTTTCTGCGGTGTTGTTGCGGTATATGTTGCGGCGGCCGGAAAAAGCGCCGCAACAACTCCGAGCTGGCCTACAATGTC TCCCTCGCCATCCTCCTCATCAGCTCCGTCGTAGCAATAACAGGGAGTATTGTCATATACGTAAACCAGCACAAGTTCTACGACAAGGTGTTCGACGCGA TGGAGTACATAATGAACATAGGACTGAACGTTTTCGAGAGACTTAAGGTTGTAGTGAATTCGTTTGCAAATGCGTTATCTCTGGCATCAAACCAGTTGTC ATTGCCACCAGATATGCAGAACAGCATCAACAATGTCAACTCTATGATCACTGCAATGGCTCGTCTCCCTGAGCTTCAGTCCTCCACCATGACCAGTGCC ATCCATCGTGTTCTTTTTCCCGCGAGGCTAGCACTGAACATAGTTGTGGGGATTGTATTAGCATTTGTACTTCTTGGTCTTCTGTTCTCTCTTCTGGGCT TGCGACGTTTAGTCTACTTATTTGCAGTCTTAAGTTGGATCATCGTCGGACTTCTATTCATTCTGAGTGCCATTTTCCTCGTCTTTCGCATTGCGGTGTC AGATGCGTGCGTGGCGATGGAGGAGTGGCTGCGTAACCCGACAACGAACTCAACAATGAACCAGGTTCTGCCATGTCTGAGCAGCACAGTTGCCGACCAG ACTTTGGCCGTCAGCAAACAAACCGTCTACTTCATGGTTAACTCCACAAACCAGTTCGACATGGCGATTGTCAATGGTATCCCCAACAAAAACCTTAACC TTCATATGTCGTTTTCCTACAACCAATCTGGACCGTTGCTTCCTACCCTCTGTAACCCCATCAATCCTGACATGACCTACCGAGCTTGCCTACCCGGTGA ACTCAACATTGCCAATGTCTCCCAGGAGTTTGAGAAGTACAAGTGTGAAGCATCGGGCCAAGGAACATGCATAAGCCCAGGGAGGTTGACGCCATACATA TACGACCAATTGGTGGCAGTTGTGAACGTGAGCTACTCGCTATACTGCGCAGGACCATTCCTAGTGGAAGTTGGTCAATGCTCCTTTGTGCTGAAAACGT TGACTGAGATCACTGAGTCTTACTGCCCAGCACTCAGAAGAGCCAAACACCAGCTTTGGGAAGCTAAGAGATTCAAATCTATGTCGAATGGCCCTTTGAA ACCCTGGTAA
AA sequence Show only first row Show all	>Lus10026050 pacid=23173130 polypeptide=Lus10026050 locus=Lus10026050.g ID=Lus10026050.BGIv1.0 annot-version=v1.0 MQQEYKESKLGITNVTLAAERTRRRDPLDGCRYYTGGWNYKDKHYWASVVFAALPLFIIAVVWFLSLGVFLCCAFLRCCCGICCGGRKKRRNNSELAYNV SLAILLISSVVAITGSIVIYVNQHKFYDKVFDAMEYIMNIGLNVFERLKVVVNSFANALSLASNQLSLPPDMQNSINNVNSMITAMARLPELQSSTMTSA IHRVLFPARLALNIVVGIVLAFVLLGLLFSLLGLRRLVYLFAVLSWIIVGLLFILSAIFLVFRIAVSDACVAMEEWLRNPTTNSTMNQVLPCLSSTVADQ TLAVSKQTVYFMVNSTNQFDMAIVNGIPNKNLNLHMSFSYNQSGPLLPTLCNPINPDMTYRACLPGELNIANVSQEFEKYKCEASGQGTCISPGRLTPYI YDQLVAVVNVSYSLYCAGPFLVEVGQCSFVLKTLTEITESYCPALRRAKHQLWEAKRFKSMSNGPLKPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25270			unknown protein		Lus10026050 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	3.7	0.9809
AT1G14200			RING/U-box superfamily protein...		Lus10042171 [exp]	4.9	0.7363
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	5.3	0.9809
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	6.5	0.9809
					Lus10009177 [exp]	7.5	0.9809
					Lus10035026 [exp]	8.4	0.9809
					Lus10028048 [exp]	9.2	0.9809
					Lus10001123 [exp]	9.9	0.9809
					Lus10023352 [exp]	10.6	0.9809
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	11.2	0.9809

Compare expression of checked genes

Lus10026050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.