Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69400 318 / 1e-108 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G19590 214 / 2e-67 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 211 / 2e-66 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80670 96 / 1e-22 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 54 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 52 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 46 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014343 [exp] 588 / 0 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003954 [exp] 209 / 2e-65 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 202 / 9e-63 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026095 [exp] 101 / 2e-24 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 96 / 3e-22 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 49 / 3e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 45 / 5e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10006511 [exp] 44 / 8e-05 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 44 / 8e-05 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162700 [exp] 399 / 3e-140 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 388 / 4e-136 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G295100 [exp] 210 / 4e-66 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 210 / 6e-66 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G180000 [exp] 87 / 2e-19 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 82 / 1e-17 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 49 / 3e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 49 / 3e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 45 / 4e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026051 pacid=23173227 polypeptide=Lus10026051 locus=Lus10026051.g ID=Lus10026051.BGIv1.0 annot-version=v1.0 ATGAGTGGAAATTGCTTGATGTTTGAAAACCAGATTGGTGATTCAGTCTCAAGGATCCGATTTGCTCCCTCCTCCAACAACCTCCTCATTTCTTCCTGGG ATTCTAATCTACGGCTGTACGATGTGGATAGCTCTAGAGTTAGACTTGAAGCTTCAGTAGGTTTCGCGCTCCTAGATTGTTGTTTCGTGAGCGAGTACAT CGCTTATTGTGCTGCTTCCGATGGTTGCATTAGAAGGTGTGACTTGAATTCCGGAAGTTTCGATACAATTGGTCGTCATGATGATGTAGCAACGTGTCTT GTCTACTCGGATGAAACATGCCGAGTTATATCATCTGGCTGGGACAGGAAGATGGTGTCATGGGATATACGCTCACCAAACAGTGAGTTCTGCTCCAGAG ATATGGATGCAGACGTGGAGGCCATGTCCGTTTCTGGATATAGCTTAACTGTTGCCTTAGGAGGGTCAATAAACACGTACGACTTGCGTTATATGGAACG ACCAGCTAGTCTAGCGAACTCGCGTTTCGATGTGAGGATAAGATCAGTCTGTTCTGTGCCTTATTGTAGAGGATATGCAGCTGGATCAGTAGATGGTATA GTGGCGCTCGAGATATCTAATTCATCAACTTCGGAAGGCACACGCTATGCTTTCCGCTGTCATCCAAAATCATCAGATGGGAGAAAACATCTAATTGCAG TAAATGACGTGCAATTCAATCCAGTAATCTCTGGTGCTTTTGTTACTGGTGACAATCAAGGAAATGTCATTGCATGGGATGCTCAAAGCAAACGAAGGCT TCACGAATTCCCAAGATACCCAACAAGTATCGCGTCCTTGTCGTACAATCATGACGGGGAACTGCTGGCTGTCGCGTCAAGCCATACTTACCAAGAAGCT GCCGAAACGTAA
AA sequence Show only first row Show all	>Lus10026051 pacid=23173227 polypeptide=Lus10026051 locus=Lus10026051.g ID=Lus10026051.BGIv1.0 annot-version=v1.0 MSGNCLMFENQIGDSVSRIRFAPSSNNLLISSWDSNLRLYDVDSSRVRLEASVGFALLDCCFVSEYIAYCAASDGCIRRCDLNSGSFDTIGRHDDVATCL VYSDETCRVISSGWDRKMVSWDIRSPNSEFCSRDMDADVEAMSVSGYSLTVALGGSINTYDLRYMERPASLANSRFDVRIRSVCSVPYCRGYAAGSVDGI VALEISNSSTSEGTRYAFRCHPKSSDGRKHLIAVNDVQFNPVISGAFVTGDNQGNVIAWDAQSKRRLHEFPRYPTSIASLSYNHDGELLAVASSHTYQEA AET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	0	1
AT5G52950			unknown protein		Lus10027565 [exp]	2.4	0.8761
AT1G15420			unknown protein		Lus10030351 [exp]	3.5	0.8959
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	4.6	0.8555
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	7.0	0.8433
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	7.1	0.8384
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	9.2	0.8514
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	9.8	0.8423
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	11.8	0.8260
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	17.0	0.8003
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	18.2	0.8376

Compare expression of checked genes

Lus10026051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.