Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31130 254 / 8e-87 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014344 [exp] 345 / 1e-122 AT4G31130 292 / 7e-102 Protein of unknown function (DUF1218) (.1) Lus10030037 [exp] 142 / 9e-44 AT4G31130 134 / 2e-41 Protein of unknown function (DUF1218) (.1) Lus10004839 [exp] 42 / 8e-05 ND 44 / 1e-05 Lus10030038 [exp] 0 / 1 AT4G31130 107 / 7e-31 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000600 [exp] 248 / 2e-84 AT4G31130 277 / 4e-96 Protein of unknown function (DUF1218) (.1) Potri.006G280900 [exp] 246 / 8e-84 AT4G31130 253 / 2e-86 Protein of unknown function (DUF1218) (.1) Potri.007G002900 [exp] 183 / 2e-58 AT4G31130 179 / 4e-57 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10026052 pacid=23173253 polypeptide=Lus10026052 locus=Lus10026052.g ID=Lus10026052.BGIv1.0 annot-version=v1.0 ATGGCGGTGACGATGAAGCTCATGTCCCTTGCCGTGGCCGGTTTCGGCGTTCTCTCTTTCATCTTCGGTGTCGTCGCCGAGAACAAGAAGCCGGCTGCTG GAACTCCGATTACGGGTAAGGGTGTGGTGATCTGCAAGTATCCGGCGGATCCGACGGTGGTGTTGGGTTACCTATCGGTTGCGTTTCTGGTAGCGGCATC GGCAGTAGGATATTACGCCCTGTTTTATCCTTACAAGGGGAAGTCGGTCCCACAGTCGGCCATGTTCCGCAGCACCAGTTTCCTTGTGTTCTTCAATATT GCACTATTCACCGGTGGCTTAGGTGCAGCGTTGCTGTTGTGGCCAACAATCACTGAGCAGAGGCACTTGTCTGGCAATGTTCATCACAATCTGGAGACTC AATGCCCAACTGCCAAGACTGGTCTGTTAGGAGGTGGTGCCTTTGTTTCGCTCGACTCGGCTCTATTCTGGTTGGTTGCACTAATGCTGGCCAGCAACGC CCGAGAAGACTACTTTGACGAAGTTGAGAACAACGGCAAGGTAGCTGGAGAAGCTAACCTTGGTTCTGTTAACTACGACGACCCCGCAGTGCTGAAGGCC TAG
AA sequence Show only first row Show all	>Lus10026052 pacid=23173253 polypeptide=Lus10026052 locus=Lus10026052.g ID=Lus10026052.BGIv1.0 annot-version=v1.0 MAVTMKLMSLAVAGFGVLSFIFGVVAENKKPAAGTPITGKGVVICKYPADPTVVLGYLSVAFLVAASAVGYYALFYPYKGKSVPQSAMFRSTSFLVFFNI ALFTGGLGAALLLWPTITEQRHLSGNVHHNLETQCPTAKTGLLGGGAFVSLDSALFWLVALMLASNAREDYFDEVENNGKVAGEANLGSVNYDDPAVLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	0	1
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	1.4	0.9334
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	2.4	0.9299
AT3G04660			F-box and associated interacti...		Lus10007277 [exp]	2.8	0.9301
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	3.7	0.9213
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	3.9	0.9211
AT3G04660			F-box and associated interacti...		Lus10007285 [exp]	4.0	0.9296
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	5.1	0.9222
					Lus10030943 [exp]	7.7	0.9300
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	8.5	0.9270
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	8.7	0.8933

Compare expression of checked genes

Lus10026052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.